View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_33 (Length: 434)
Name: NF0791_low_33
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 77 - 405
Target Start/End: Complemental strand, 30768878 - 30768550
Alignment:
| Q |
77 |
agcagagatccatttaaagccagagcgacacctattataattaatgagtagcatagtcaacacctttaaaacaattcgtaacttttgtcctaaaaagaag |
176 |
Q |
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| T |
30768878 |
agcagatatccatttaaagccagagcgacacctattataattaatgagtagcatagtcaacacctttaaaaaaatacataacttttgtcctaaaaagaag |
30768779 |
T |
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| Q |
177 |
taggatttcaaagggcacatgaatcataacaacaacacttaaactttattagttttaaaactcatcgttacaaaaccggttgtagggtgaggagtgactc |
276 |
Q |
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| T |
30768778 |
taggacttcaaagggcacatgaatcataacaacaacacttaaactttattagttttaaaactcatcgttacaaaaccggttgtagggtgaggagtgactc |
30768679 |
T |
|
| Q |
277 |
tctttataagcactttccggttagacttgcatttctccaaataaaaacacactcattatcaatatcctcatcaataagcccaaaaccaaccccaccaaat |
376 |
Q |
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| T |
30768678 |
tctttataagcactttccggttagacttgcatttctccaaataaaaacacactcattatcaatatcctcatcaataagcccaaaaccaaccccaccaaat |
30768579 |
T |
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| Q |
377 |
agaaacaactttccatagaaagcatagag |
405 |
Q |
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| T |
30768578 |
agaaacaacttttcatagaaagcatagag |
30768550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 44573423 - 44573371
Alignment:
| Q |
235 |
aactcatcgttacaaaaccgg-ttgtagggtgaggagtgact-ctctttataa |
285 |
Q |
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| T |
44573423 |
aactcatccttacaaaaccggcttgtagggtgaggagtgcctcctctttataa |
44573371 |
T |
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