View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_low_38 (Length: 416)

Name: NF0791_low_38
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_low_38
NF0791_low_38
[»] chr4 (14 HSPs)
chr4 (9-119)||(31419570-31419680)
chr4 (313-387)||(32166247-32166321)
chr4 (247-315)||(43591263-43591331)
chr4 (237-316)||(31419313-31419393)
chr4 (265-315)||(581434-581484)
chr4 (265-321)||(50380479-50380535)
chr4 (259-315)||(581741-581797)
chr4 (264-314)||(13759595-13759645)
chr4 (265-314)||(581129-581178)
chr4 (264-316)||(7056031-7056086)
chr4 (265-314)||(35579447-35579496)
chr4 (265-321)||(39482654-39482711)
chr4 (265-316)||(43592223-43592275)
chr4 (265-316)||(51860811-51860863)
[»] chr7 (7 HSPs)
chr7 (247-314)||(39700510-39700577)
chr7 (259-316)||(45623319-45623376)
chr7 (259-311)||(27260683-27260735)
chr7 (265-310)||(9334209-9334255)
chr7 (265-314)||(3571691-3571740)
chr7 (264-315)||(1725864-1725915)
chr7 (259-310)||(26643043-26643095)
[»] chr8 (6 HSPs)
chr8 (217-314)||(22928109-22928207)
chr8 (51-108)||(22928396-22928451)
chr8 (264-316)||(9288780-9288834)
chr8 (265-316)||(29781132-29781183)
chr8 (273-321)||(510296-510344)
chr8 (269-316)||(43653744-43653792)
[»] chr6 (11 HSPs)
chr6 (247-296)||(8849034-8849083)
chr6 (265-311)||(20014729-20014775)
chr6 (265-314)||(23158117-23158166)
chr6 (265-316)||(18763100-18763151)
chr6 (265-316)||(21686110-21686161)
chr6 (259-314)||(31575107-31575162)
chr6 (221-316)||(2661678-2661774)
chr6 (269-320)||(19378390-19378442)
chr6 (259-314)||(7367875-7367930)
chr6 (265-316)||(14600275-14600326)
chr6 (272-316)||(20879072-20879116)
[»] scaffold0022 (1 HSPs)
scaffold0022 (247-310)||(152900-152963)
[»] chr5 (8 HSPs)
chr5 (247-314)||(40797515-40797582)
chr5 (265-314)||(41612838-41612887)
chr5 (264-316)||(23196123-23196177)
chr5 (265-314)||(38928634-38928683)
chr5 (270-314)||(19832214-19832258)
chr5 (269-314)||(21116945-21116991)
chr5 (265-314)||(42880087-42880136)
chr5 (265-321)||(22542950-22543006)
[»] scaffold0164 (2 HSPs)
scaffold0164 (221-313)||(34289-34382)
scaffold0164 (259-314)||(6152-6208)
[»] chr3 (6 HSPs)
chr3 (254-305)||(22159166-22159218)
chr3 (270-314)||(21974618-21974663)
chr3 (270-314)||(21997049-21997094)
chr3 (265-314)||(51422963-51423014)
chr3 (259-314)||(6509911-6509966)
chr3 (265-316)||(18983759-18983811)
[»] scaffold0155 (1 HSPs)
scaffold0155 (224-314)||(36835-36926)
[»] scaffold0039 (1 HSPs)
scaffold0039 (269-323)||(79962-80017)
[»] chr2 (6 HSPs)
chr2 (265-316)||(23462330-23462381)
chr2 (257-314)||(28381770-28381827)
chr2 (265-315)||(44923875-44923925)
chr2 (265-314)||(2704385-2704434)
chr2 (265-314)||(23463744-23463793)
chr2 (265-316)||(25423762-25423814)
[»] chr1 (4 HSPs)
chr1 (259-316)||(13111668-13111725)
chr1 (265-314)||(15721410-15721459)
chr1 (265-316)||(15847411-15847462)
chr1 (265-321)||(18509613-18509669)
[»] scaffold0003 (1 HSPs)
scaffold0003 (272-313)||(210277-210320)
[»] scaffold0214 (2 HSPs)
scaffold0214 (264-314)||(11572-11622)
scaffold0214 (264-314)||(25872-25922)
[»] scaffold0179 (1 HSPs)
scaffold0179 (264-316)||(4724-4777)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 31419680 - 31419570
Alignment:
Q  9 gaataatatgtaggaatagtagatgctttcaacaacaaaagaatgtagaaacaatagatgattagagaaaacaaaaaagagggtctcccatccatcttcc 108  Q
    |||||| |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31419680 gaataacatgtagaaatagtagatcctttcaccaacaaaagaatgtagaaacaatagatgattagagaaaacaaaaaagagggtcttccatccatcttcc 31419581  T
Q  109 acaaaagaaaa 119  Q
    | |||| ||||    
T  31419580 aaaaaaaaaaa 31419570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 32166321 - 32166247
Alignment:
Q  313 attactatttttaaatagtactttcgaatgtttgagtgcgatttattgttattattattactactatctattaat 387  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32166321 attactatttttaaatagtactttcaaatgtttgagtgcgatttattgttattattattactactatctattaat 32166247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 43591331 - 43591263
Alignment:
Q  247 aaggataatttgggaaataaaataggctacaccaaacaaaagttttccctttattaataggtatagatt 315  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43591331 aagggtaatttgggaaagaaaataggctacaccaaacaaaagttttccctttattaataggtatagatt 43591263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 31419393 - 31419313
Alignment:
Q  237 ttggaagttaaaggataatttgggaaat-aaaataggctacaccaaacaaaagttttccctttattaataggtatagatta 316  Q
    ||||||||||||||||||||||||||   |||| |||||||| |||||  | ||||| |||||||||||||||||||||||    
T  31419393 ttggaagttaaaggataatttgggaatggaaaaaaggctacatcaaactcatgttttgcctttattaataggtatagatta 31419313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 581484 - 581434
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagatt 315  Q
    ||||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  581484 aaaataggctacaccaaactaaagtattgcctttattaataggtatagatt 581434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 50380479 - 50380535
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagattactatt 321  Q
    |||| ||||||||||||| |||||| || ||||||||||||||||||||||| ||||    
T  50380479 aaaaaaggctacaccaaaaaaaagtatttcctttattaataggtatagattattatt 50380535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 581797 - 581741
Alignment:
Q  259 ggaaataaaataggctacaccaaacaaaagttttccctttattaataggtatagatt 315  Q
    ||||| ||||||||||||||||||  ||||| ||  |||||||||||||||||||||    
T  581797 ggaaagaaaataggctacaccaaattaaagtattgtctttattaataggtatagatt 581741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 13759595 - 13759645
Alignment:
Q  264 taaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    ||||||||||||||||||| | | || || |||||||||||||||||||||    
T  13759595 taaaataggctacaccaaatagatgtattgcctttattaataggtatagat 13759645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 581178 - 581129
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    ||||||| ||||||||||| ||| | || |||||||||||||||||||||    
T  581178 aaaatagactacaccaaaccaaaatattacctttattaataggtatagat 581129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 7056031 - 7056086
Alignment:
Q  264 taaaataggctacaccaaac---aaaagttttccctttattaataggtatagatta 316  Q
    ||||||||||||||||||||   |||||  || |||||||||||||||||||||||    
T  7056031 taaaataggctacaccaaaccaaaaaagaattgcctttattaataggtatagatta 7056086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 35579447 - 35579496
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||| ||||||||||||| || ||| || |||||||||||||||||||||    
T  35579447 aaaaaaggctacaccaaaaaatagtattgcctttattaataggtatagat 35579496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 39482654 - 39482711
Alignment:
Q  265 aaaataggctacaccaaacaaaa-gttttccctttattaataggtatagattactatt 321  Q
    |||||| |||||| |||| |||| ||||| ||||||||||||||||||||||| ||||    
T  39482654 aaaatatgctacatcaaataaaatgttttgcctttattaataggtatagattattatt 39482711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 43592275 - 43592223
Alignment:
Q  265 aaaataggctacaccaaac-aaaagttttccctttattaataggtatagatta 316  Q
    |||| |||||||||||||  |||||| || |||||||||||||||||||||||    
T  43592275 aaaaaaggctacaccaaaagaaaagtattacctttattaataggtatagatta 43592223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 51860863 - 51860811
Alignment:
Q  265 aaaataggctacaccaaacaaaa-gttttccctttattaataggtatagatta 316  Q
    |||||| |||||||||||||||| || || ||||||||||||||| |||||||    
T  51860863 aaaataagctacaccaaacaaaatgtattgcctttattaataggtgtagatta 51860811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 39700577 - 39700510
Alignment:
Q  247 aaggataatttgggaaataaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||| |||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39700577 aagggtaatttaggaaagaaaataggctacaccaaacaaaagttttacctttattaataggtatagat 39700510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 45623376 - 45623319
Alignment:
Q  259 ggaaataaaataggctacaccaaacaaaagttttccctttattaataggtatagatta 316  Q
    ||||| ||||||||||||||||||  ||||| || |||||||||||||||||||||||    
T  45623376 ggaaagaaaataggctacaccaaaagaaagtattgcctttattaataggtatagatta 45623319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 27260683 - 27260735
Alignment:
Q  259 ggaaataaaataggctacaccaaacaaaagttttccctttattaataggtata 311  Q
    ||||| ||||||||||||||||||   ||||||||||||||||||||||||||    
T  27260683 ggaaaaaaaataggctacaccaaaactaagttttccctttattaataggtata 27260735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 9334209 - 9334255
Alignment:
Q  265 aaaataggctacaccaaacaaaa-gttttccctttattaataggtat 310  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||    
T  9334209 aaaataggctacaccaaacaaaatgttttgcctttattaataggtat 9334255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 3571691 - 3571740
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||||||||||||||||| | | ||||||||||||||||||| |||||||    
T  3571691 aaaataggctacaccaaaaacatgttttccctttattaatagttatagat 3571740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 1725864 - 1725915
Alignment:
Q  264 taaaataggctacaccaaacaaaagttttccctttattaataggtatagatt 315  Q
    ||||||||||||||||||| | | || || ||||||||||||||||||||||    
T  1725864 taaaataggctacaccaaatagatgtattgcctttattaataggtatagatt 1725915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 26643095 - 26643043
Alignment:
Q  259 ggaaataaaataggctacacc-aaacaaaagttttccctttattaataggtat 310  Q
    ||||| ||||||||||||||| ||| |||||| || |||||||||||||||||    
T  26643095 ggaaagaaaataggctacaccaaaagaaaagtattgcctttattaataggtat 26643043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 22928207 - 22928109
Alignment:
Q  217 ctctcggaagttacataattttggaagttaaaggataatttgggaaat-aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||||||||||||||||||  ||||| ||||||| |||||| ||||   |||| ||||||||||||||| | |||||  ||||||||||||||||||||    
T  22928207 ctctcggaagttacataatcctggaatttaaagggtaattttggaatggaaaaaaggctacaccaaacacatgttttgtctttattaataggtatagat 22928109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 22928451 - 22928396
Alignment:
Q  51 atgtagaaacaatagatgattagagaaaacaaaaaagagggtctcccatccatcttcc 108  Q
    |||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  22928451 atgtagtaacaatagatgattagagaaaac--aaaagagggtctcccatccatcttcc 22928396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 9288834 - 9288780
Alignment:
Q  264 taaaataggctacaccaaac--aaaagttttccctttattaataggtatagatta 316  Q
    ||||||||||||||||||||  |||||| || |||||||||||| ||||||||||    
T  9288834 taaaataggctacaccaaaccaaaaagtattgcctttattaataagtatagatta 9288780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 29781183 - 29781132
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagatta 316  Q
    |||| ||||||||||||| || ||| || |||||||||||||||||||||||    
T  29781183 aaaaaaggctacaccaaaaaatagtattgcctttattaataggtatagatta 29781132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 510296 - 510344
Alignment:
Q  273 ctacaccaaacaaaagttttccctttattaataggtatagattactatt 321  Q
    |||||||||| || ||| || ||||||||||||||||||||||| ||||    
T  510296 ctacaccaaaaaatagtattgcctttattaataggtatagattattatt 510344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 43653744 - 43653792
Alignment:
Q  269 taggctacaccaaa-caaaagttttccctttattaataggtatagatta 316  Q
    |||||||||||||| ||||||| || ||||||||||||||||| |||||    
T  43653744 taggctacaccaaaacaaaagtattacctttattaataggtatggatta 43653792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 8849034 - 8849083
Alignment:
Q  247 aaggataatttgggaaataaaataggctacaccaaacaaaagttttccct 296  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  8849034 aaggataatttgggaaagaaattaggctacaccaaacaaaagttttccct 8849083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 20014775 - 20014729
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtata 311  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||    
T  20014775 aaaataggctacaccaaacaaaagtattgcctttattaataggtata 20014729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 23158166 - 23158117
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  23158166 aaaataggctacaccaaacaaaagtattgtctttattaataggtatagat 23158117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 18763151 - 18763100
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagatta 316  Q
    |||||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  18763151 aaaataggctacaccaaacaaaagtactgtctttattaataggtatagatta 18763100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 21686110 - 21686161
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagatta 316  Q
    |||| ||||||||||||| |||||| || |||||||||||||||||||||||    
T  21686110 aaaaaaggctacaccaaaaaaaagtattgcctttattaataggtatagatta 21686161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 31575107 - 31575162
Alignment:
Q  259 ggaaataaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    ||||| ||||||||||||| ||||| ||||| || |||||||||||||||||||||    
T  31575107 ggaaagaaaataggctacatcaaaccaaagtattgcctttattaataggtatagat 31575162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 2661774 - 2661678
Alignment:
Q  221 cggaagttacataattttggaagttaaaggataatttgggaaataaaata-ggctacaccaaacaaaagttttccctttattaataggtatagatta 316  Q
    ||||||||||||||   | ||||||| ||| |||||| ||||  |||| | |||||||||| |  |||||||||||||||||||||| |||||||||    
T  2661774 cggaagttacataaagctagaagttagagggtaattttggaatgaaaaaaaggctacaccacaacaaagttttccctttattaatagttatagatta 2661678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 19378442 - 19378390
Alignment:
Q  269 taggctacaccaaa-caaaagttttccctttattaataggtatagattactat 320  Q
    |||||||||||||| ||||| | || |||||||||||||||||||||||||||    
T  19378442 taggctacaccaaaacaaaaatattgcctttattaataggtatagattactat 19378390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 7367930 - 7367875
Alignment:
Q  259 ggaaataaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    ||||| ||||||||||||| ||||  ||||| || |||||||||||||||||||||    
T  7367930 ggaaagaaaataggctacaacaaaagaaagtattgcctttattaataggtatagat 7367875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 14600326 - 14600275
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagatta 316  Q
    |||| |||||||||||||  || ||||||||||||||||||| |||||||||    
T  14600326 aaaaaaggctacaccaaaacaatgttttccctttattaatagttatagatta 14600275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 20879116 - 20879072
Alignment:
Q  272 gctacaccaaacaaaagttttccctttattaataggtatagatta 316  Q
    ||||||||||| |||| | || |||||||||||||||||||||||    
T  20879116 gctacaccaaaaaaaaatattgcctttattaataggtatagatta 20879072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 152900 - 152963
Alignment:
Q  247 aaggataatttgggaaataaaataggctacaccaaacaaaagttttccctttattaataggtat 310  Q
    |||| |||||| ||||| |||||||||||||| ||||||| ||||| |||||||||||||||||    
T  152900 aagggtaatttaggaaagaaaataggctacacgaaacaaatgttttgcctttattaataggtat 152963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 40797582 - 40797515
Alignment:
Q  247 aaggataatttgggaaataaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||| |||||||||||| |||||||||||| | ||| |||||||||| ||||||||||| ||||||||    
T  40797582 aagggtaatttgggaaagaaaataggctacgctaaataaaagttttctctttattaataagtatagat 40797515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 41612887 - 41612838
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    ||||||||||||||||||| ||||| || |||||||||||||||||||||    
T  41612887 aaaataggctacaccaaaccaaagtattgcctttattaataggtatagat 41612838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 23196123 - 23196177
Alignment:
Q  264 taaaataggctacaccaaac--aaaagttttccctttattaataggtatagatta 316  Q
    ||||||||||||||||||||  |||||| || |||||||||||||||||||||||    
T  23196123 taaaataggctacaccaaaccaaaaagtattgcctttattaataggtatagatta 23196177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 38928634 - 38928683
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||||||||||||||||| | | ||||||||||||||||||| |||||||    
T  38928634 aaaataggctacaccaaaaacatgttttccctttattaatagttatagat 38928683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 19832258 - 19832214
Alignment:
Q  270 aggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    ||||||||||||| |||||| || |||||||||||||||||||||    
T  19832258 aggctacaccaaaaaaaagtattgcctttattaataggtatagat 19832214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 21116945 - 21116991
Alignment:
Q  269 taggctacaccaaa-caaaagttttccctttattaataggtatagat 314  Q
    |||||||||||||| ||||||| || |||||||||||||||||||||    
T  21116945 taggctacaccaaaacaaaagtattgcctttattaataggtatagat 21116991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 42880136 - 42880087
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    ||||||||||||||||||  || || || |||||||||||||||||||||    
T  42880136 aaaataggctacaccaaagcaatgtattgcctttattaataggtatagat 42880087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 22543006 - 22542950
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagattactatt 321  Q
    |||| |||||||| |||| |||||| || |||||||||||||||||| |||| ||||    
T  22543006 aaaaaaggctacatcaaaaaaaagtattgcctttattaataggtatatattattatt 22542950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 313
Target Start/End: Complemental strand, 34382 - 34289
Alignment:
Q  221 cggaagttacataattttggaagttaaaggataatttgggaaataaaata-ggctacaccaaacaaaagttttccctttattaataggtataga 313  Q
    |||||||||||||||    ||||||| ||| |||||| |||| ||||| | |||||||||||| || ||| |||||||||||||||||||||||    
T  34382 cggaagttacataatgcaagaagttagagggtaattttggaattaaaaaaaggctacaccaaaaaatagtattccctttattaataggtataga 34289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 6208 - 6152
Alignment:
Q  259 ggaaataaaataggctacaccaaac-aaaagttttccctttattaataggtatagat 314  Q
    |||| ||||| |||||||||||||  |||||| || |||||||||||||||||||||    
T  6208 ggaactaaaaaaggctacaccaaaagaaaagtattgcctttattaataggtatagat 6152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 22159166 - 22159218
Alignment:
Q  254 atttgggaaataaaataggctacaccaaacaaaa-gttttccctttattaata 305  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||    
T  22159166 atttgggaaaaaaaataggctacaccaaacaaaatgttttgcctttattaata 22159218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 21974618 - 21974663
Alignment:
Q  270 aggctacaccaaacaaaa-gttttccctttattaataggtatagat 314  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||    
T  21974618 aggctacaccaaacaaaatgttttgcctttattaataggtatagat 21974663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 21997049 - 21997094
Alignment:
Q  270 aggctacaccaaacaaaa-gttttccctttattaataggtatagat 314  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||    
T  21997049 aggctacaccaaacaaaatgttttgcctttattaataggtatagat 21997094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 51423014 - 51422963
Alignment:
Q  265 aaaataggctacaccaaac--aaaagttttccctttattaataggtatagat 314  Q
    |||||||||||||||||||  |||||| || |||||||||||||||||||||    
T  51423014 aaaataggctacaccaaacccaaaagtattgcctttattaataggtatagat 51422963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 6509911 - 6509966
Alignment:
Q  259 ggaaataaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    ||||| ||||||||||| ||||||| ||||| ||  ||||||||||||||||||||    
T  6509911 ggaaagaaaataggctataccaaaccaaagtattggctttattaataggtatagat 6509966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 18983811 - 18983759
Alignment:
Q  265 aaaataggctacaccaaac-aaaagttttccctttattaataggtatagatta 316  Q
    |||| |||||||||||||  |||||| || |||||||||||||||||||||||    
T  18983811 aaaaaaggctacaccaaaagaaaagtattgcctttattaataggtatagatta 18983759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 36926 - 36835
Alignment:
Q  224 aagttacataattttggaagttaaaggataatttgggaaat-aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||||||||||| |||||||| ||||| |||||| ||||   |||| | ||||||||||||  | ||||| |||||||||||||||||||||    
T  36926 aagttacataatcttggaagtcaaagggtaattttggaatggaaaaaaagctacaccaaactcatgttttgcctttattaataggtatagat 36835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 80017 - 79962
Alignment:
Q  269 taggctacaccaaa-caaaagttttccctttattaataggtatagattactatttt 323  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||    
T  80017 taggctacaccaaaacaaaagtattgcctttattaataggtatagattattatttt 79962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 23462330 - 23462381
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagatta 316  Q
    |||||||| |||||||||   |||||||||||||||||||||||||||||||    
T  23462330 aaaataggatacaccaaaactaagttttccctttattaataggtatagatta 23462381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 28381827 - 28381770
Alignment:
Q  257 tgggaaataaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    ||||||| ||| ||||||||||||||   ||||||||||||||||||||| |||||||    
T  28381827 tgggaaagaaagtaggctacaccaaaactaagttttccctttattaatagttatagat 28381770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 44923875 - 44923925
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagatt 315  Q
    |||| ||||||||||||| || ||| || ||||||||||||||||||||||    
T  44923875 aaaaaaggctacaccaaaaaatagtattgcctttattaataggtatagatt 44923925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 2704434 - 2704385
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||| |||||||||||||| || ||||| ||||||||||||| |||||||    
T  2704434 aaaaaaggctacaccaaactaatgttttgcctttattaatagttatagat 2704385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 23463744 - 23463793
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||| |||||||||||||  ||||| || |||||||||||||||||||||    
T  23463744 aaaaaaggctacaccaaaacaaagtattgcctttattaataggtatagat 23463793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 25423762 - 25423814
Alignment:
Q  265 aaaataggctacaccaaac-aaaagttttccctttattaataggtatagatta 316  Q
    ||||||| ||||||||||  |||||| || |||||||||||||||||||||||    
T  25423762 aaaatagactacaccaaaagaaaagtattgcctttattaataggtatagatta 25423814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 13111668 - 13111725
Alignment:
Q  259 ggaaataaaataggctacaccaaacaaaagttttccctttattaataggtatagatta 316  Q
    ||||| ||||||||||||| ||||   || ||||||||||||||||||||||||||||    
T  13111668 ggaaaaaaaataggctacatcaaaactaaattttccctttattaataggtatagatta 13111725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 15721459 - 15721410
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||| ||||||||||||| ||||||  |||||||||||||||||||||||    
T  15721459 aaaaaaggctacaccaaagaaaagtactccctttattaataggtatagat 15721410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 15847411 - 15847462
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagatta 316  Q
    ||||||||||||||||||   | ||||| |||||||||||||||||||||||    
T  15847411 aaaataggctacaccaaatccatgttttgcctttattaataggtatagatta 15847462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 18509613 - 18509669
Alignment:
Q  265 aaaataggctacaccaaacaaaagttttccctttattaataggtatagattactatt 321  Q
    ||||||||||||||||||   | ||||| |||||||||||||||||| |||| ||||    
T  18509613 aaaataggctacaccaaatctatgttttgcctttattaataggtataaattattatt 18509669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 210277 - 210320
Alignment:
Q  272 gctacaccaaacaaaagttttcccttta--ttaataggtataga 313  Q
    ||||||||||||||||||||||||||||  ||||||||||||||    
T  210277 gctacaccaaacaaaagttttccctttattttaataggtataga 210320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 11572 - 11622
Alignment:
Q  264 taaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||||||||||||||||||   |||| || |||||||||||||||||||||    
T  11572 taaaataggctacaccaaaaccaagtattgcctttattaataggtatagat 11622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 25872 - 25922
Alignment:
Q  264 taaaataggctacaccaaacaaaagttttccctttattaataggtatagat 314  Q
    |||||||||||||||||||   |||| || |||||||||||||||||||||    
T  25872 taaaataggctacaccaaaaccaagtattgcctttattaataggtatagat 25922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 4777 - 4724
Alignment:
Q  264 taaaataggctacaccaaac-aaaagttttccctttattaataggtatagatta 316  Q
    |||||||||||||||||||  |||||| || |||||| ||||||||||||||||    
T  4777 taaaataggctacaccaaaagaaaagtattgcctttactaataggtatagatta 4724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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