View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_39 (Length: 411)
Name: NF0791_low_39
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 95 - 407
Target Start/End: Complemental strand, 11034474 - 11034162
Alignment:
| Q |
95 |
atactttgcaactgtgactcctccaaaatcttctacaataaaaacaaggctaacaatttgtcaatttcaccatcgcaccaatcaactcatatctatactg |
194 |
Q |
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| T |
11034474 |
atactttgcaagtgtgactcctccaaaatcttctacaataaaaacaaggctaacaatttgtcaatttcaccatcgcaccaatcgactcatatctatactg |
11034375 |
T |
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| Q |
195 |
tgatgatgtgcatttactgccggcgaaggggcggcactggaacgacaaacggggcaattcaaatgcgaatggagccacatgtcaatacactttacatgaa |
294 |
Q |
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| T |
11034374 |
tgatgatgtgcatttactgccggcgaaggggcggcactggaacgacaaacggggcaattcaaatgcgaatggagccacatgtcaatacactttacatgaa |
11034275 |
T |
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| Q |
295 |
aagaatgcaagcactcaggcatagtcctcaattcctcaccttcctcaaaatctcccaaacacaccgcacatgtgccgccttcgtcatctgtaacaacgtc |
394 |
Q |
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| T |
11034274 |
aagaatgcaagcactcaggcatagtcctcaattcctcaccttcctcaaaatctcccaaacacaccgcacatgtgccgccttcgtcatctgtaacaacgtc |
11034175 |
T |
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| Q |
395 |
acctttgcttctc |
407 |
Q |
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||||||| ||||| |
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| T |
11034174 |
acctttgtttctc |
11034162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 214 - 389
Target Start/End: Complemental strand, 11036039 - 11035864
Alignment:
| Q |
214 |
ccggcgaaggggcggcactggaacgacaaacggggcaattcaaatgcgaatggagccacatgtcaatacactttacatgaaaagaatgcaagcactcagg |
313 |
Q |
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| T |
11036039 |
ccggtgaaggggcggtactggaacgacaaacggggcaattcgaatgtgaatgaagccacatgtcaatacatgaaacatgaaaagagtgtaagcactcagg |
11035940 |
T |
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| Q |
314 |
catagtcctcaattcctcaccttcctcaaaatctcccaaacacaccgcacatgtgccgccttcgtcatctgtaaca |
389 |
Q |
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| T |
11035939 |
catagtcctcaactcttcaccctcctcaaaatctcccaaacacacggcacacgtgtcgccttcgccatctggaaca |
11035864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 364
Target Start/End: Original strand, 30295464 - 30295588
Alignment:
| Q |
240 |
caaacggggcaattcaaatgcgaatggagccacatgtcaatacactttacatgaaaagaatgcaagcactcaggcatagtcctcaattcctcaccttcct |
339 |
Q |
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||||| || ||||| | ||| ||| |||||||||| ||||| || |||||| ||||| |||| ||| |||||||| |||||| ||||||||||||| |
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| T |
30295464 |
caaacaggacaattgagatgtgaaaggagccacatatcaatgcatggtacatggaaagagtgcatgcaagaaggcatagccctcaactcctcaccttcct |
30295563 |
T |
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| Q |
340 |
caaaatctcccaaacacaccgcaca |
364 |
Q |
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|||| ||||| || ||||| ||||| |
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| T |
30295564 |
caaagtctcctaagcacacagcaca |
30295588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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