View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_4 (Length: 682)
Name: NF0791_low_4
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 23675378 - 23675673
Alignment:
| Q |
9 |
agcaaagggaggaaactagaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatct |
108 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23675378 |
agcaaaggttggaaaccagaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatct |
23675477 |
T |
|
| Q |
109 |
taatgatttttcatcttttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatgaggtg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23675478 |
taatgatttttcatcttttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagacgaggttggaaatgaggtg |
23675577 |
T |
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| Q |
209 |
ggattatgaataggacaaaggagtcggaaaatactagttatgaannnnnnnnctttatcttttgttgtgtaatatggagtcttttctccactatca |
304 |
Q |
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| T |
23675578 |
ggattatgaataggacaaaggagtcggaaaatactagttatgaattttttttctttatcttttgttgtgtaatatggagtcttttctccactatca |
23675673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 386 - 653
Target Start/End: Original strand, 23675754 - 23676021
Alignment:
| Q |
386 |
aagttatgtttacttttaaactattgatgatgatcaatggaataaatagagactttgttttgtgatctccaaatgatcggtataagagtttatttatgca |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23675754 |
aagttatgtttacttttaaactattgatgatgatcaatggaataaatagagattttgttttgtgatctccaaatgatcggtataagagtttatttatgca |
23675853 |
T |
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| Q |
486 |
agcctatacacttgactcaaacccacatgaaaacttctctctagacacctatcgatttttcacaagcacctcaagttgaccaaaatacctccaacaacta |
585 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
23675854 |
agcctatacacttgactcaaacccacatgaaaatttctctctagacacctatcgatttttcacaggcacttcaagttgaccaaaatacctccaacaacta |
23675953 |
T |
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| Q |
586 |
tttactaccattcgtttctaaattgaatttaatttacgttccaaacttgtcatatacaataacacata |
653 |
Q |
| |
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||||||||| |||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23675954 |
tttactaccgttcgtttccaaactgaatttaatttacgttccagacttgtcatatacaataacacata |
23676021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 7e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 26458090 - 26457847
Alignment:
| Q |
9 |
agcaaagggaggaaactagaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatct |
108 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |
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| T |
26458090 |
agcaaagggaggaaaccagaaagatggaaatgaccaatatcattgatcattatattcaaaccatagaatttaatggaaattcgatgagcaaatctgatct |
26457991 |
T |
|
| Q |
109 |
taatgatttttcatcttttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatgaggtg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||| |||| |
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| T |
26457990 |
caatgatttttcatcttttattgatgagaatttgaaggaggttaatctgaagatgaaagaaatgacaatcaaagatcaaaaggaggttggaaatggggtg |
26457891 |
T |
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| Q |
209 |
ggattatgaataggacaaaggagtcggaaaatactagttatgaa |
252 |
Q |
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|||||||||||||||| ||||| || |||||||||||| |||| |
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| T |
26457890 |
ggattatgaataggactaaggatccgaaaaatactagttttgaa |
26457847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 386 - 653
Target Start/End: Complemental strand, 26457709 - 26457442
Alignment:
| Q |
386 |
aagttatgtttacttttaaactattgatgatgatcaatggaataaatagagactttgttttgtgatctccaaatgatcggtataagagtttatttatgca |
485 |
Q |
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|||||||||||||||||||| || |||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26457709 |
aagttatgtttacttttaaattaccgatgataatcaatggaatacatagacaatttgttttgtgatctccaaatgatcggtataagagttcatttatgca |
26457610 |
T |
|
| Q |
486 |
agcctatacacttgactcaaacccacatgaaaacttctctctagacacctatcgatttttcacaagcacctcaagttgaccaaaatacctccaacaacta |
585 |
Q |
| |
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||| |||||||||||||||||||||| ||||| |||||| ||| |||||| | ||||||| | ||||||||||||||||||||||||||||||||| | |
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| T |
26457609 |
agctcatacacttgactcaaacccacacgaaaatttctctttaggcacctagtgttttttcataggcacctcaagttgaccaaaatacctccaacaacaa |
26457510 |
T |
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| Q |
586 |
tttactaccattcgtttctaaattgaatttaatttacgttccaaacttgtcatatacaataacacata |
653 |
Q |
| |
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|| ||||||||||||||| ||| | ||||||||| |||| | || | ||||||||| ||||||||| |
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| T |
26457509 |
ttaactaccattcgtttccaaactacatttaattttagttctagacctatcatatacactaacacata |
26457442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 27641161 - 27641346
Alignment:
| Q |
18 |
aggaaactagaaagaaggaaatgaccaatatcattgatcattatattcaaaccgtagaatttaatggaaattcaatgagcaaatatgatcttaatgattt |
117 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
27641161 |
aggaaaccagaaagaaggaaatgaccaatatcattcatcatttcattcataccacagaatttaatggatatttaatgagcaaacctgatcttaatgattt |
27641260 |
T |
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| Q |
118 |
ttcatcttttattgatgagaatttgaaggaggttgatcggaagatgaaagaaatgacaattaaagatcaagaggaggttggaaatg |
203 |
Q |
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|| | | |||||||||||||||||| |||||| ||| |||||||||| |||| |||| ||||| ||||||||||||||||| |
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| T |
27641261 |
gtcctatgttattgatgagaatttgagggaggtcaatcaaaagatgaaaggaatgcgaattgaagattgagaggaggttggaaatg |
27641346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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