View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_low_43 (Length: 393)

Name: NF0791_low_43
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_low_43
NF0791_low_43
[»] chr8 (1 HSPs)
chr8 (112-393)||(43231766-43232046)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 112 - 393
Target Start/End: Complemental strand, 43232046 - 43231766
Alignment:
Q  112 agacatcagacacaacatcctaccccgagcacattttgtaatatgttaaattttatatcaattttcccctctcttctgaactcaaacacaataaaaattt 211  Q
    ||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  43232046 agacatcagacacaacaccctaccccaagaacattttgtaatattttaaattttatatcaattttccc-tctcttctgaactcaaacacgataaaaattt 43231948  T
Q  212 gaaagtgtcaaaattatctcgaaatatcaatgttgttttttcaatgagttgcaatgaatgaggattgtttcaaggactcgtggctcactaaagtgaattc 311  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43231947 taaagtgtcaaaattatctcgaaatatcaatgttgttttttcaatgagttgcaatgaatgaggattgtttcaaggactcgtggatcactaaagtgaattc 43231848  T
Q  312 taaaatttatatttcttgctattattttgatgagtcataaaatacaatttatttttcataaagtaaaataaaaatcaaagtc 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43231847 taaaatttatatttcttgctattattttgatgagtcataaaatacaatttatttttcataaagtaaaataaaaatcaaagtc 43231766  T

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