View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_44 (Length: 386)
Name: NF0791_low_44
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 59 - 357
Target Start/End: Original strand, 41011809 - 41012105
Alignment:
| Q |
59 |
tagtgaaagtagtatgatcatagaaggtatgagcagagtttgtccatatagcccagaagaaaagaaagtgagaattgaaagatacagaataaagaggaat |
158 |
Q |
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| T |
41011809 |
tagtgaaagtagtatgatcatagaaggtatgagcagagtttgtccatatagcccagaagaaaagaaagtgagaattgaaagatacagaataaagaggaat |
41011908 |
T |
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| Q |
159 |
cagaggaactttaacaagaaaattaaggttaactcttgtacaaaatacacacatggcacatctaaattttgttacatttgtctcattttactagtattct |
258 |
Q |
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| T |
41011909 |
cagaggaactttaacaagaaaattaaggttaactcttgtacaaaatacacacatggcacatctaaattttgttacatttgtctcattttactagtattct |
41012008 |
T |
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| Q |
259 |
atgttttttacttgatgaatttatttaaaagtgtcgcaccaatttaactttcatacactaaaataattgtccttttacaataggagcaaaaatgaaaaa |
357 |
Q |
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| T |
41012009 |
atg--ttttacttgatgaatttatttaaaagtgtcgcaccaatttaactttcatacactaaaataattgtccttttacaataggagcaaaaatgaaaaa |
41012105 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 22890673 - 22890755
Alignment:
| Q |
108 |
agcccagaagaaaagaaagtgagaattgaaagatacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaa |
190 |
Q |
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| T |
22890673 |
agcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaa |
22890755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 22942337 - 22942419
Alignment:
| Q |
108 |
agcccagaagaaaagaaagtgagaattgaaagatacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaa |
190 |
Q |
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|||||||| |||||||| ||||| ||||| ||||| |||| |||| ||||||||||||| || ||||||||||||||||| |
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| T |
22942337 |
agcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaa |
22942419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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