View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_low_47 (Length: 379)

Name: NF0791_low_47
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_low_47
NF0791_low_47
[»] chr3 (8 HSPs)
chr3 (1-369)||(47193463-47193831)
chr3 (234-368)||(9792564-9792698)
chr3 (14-252)||(26698512-26698750)
chr3 (14-252)||(26733675-26733913)
chr3 (14-252)||(26736900-26737138)
chr3 (57-249)||(26750879-26751071)
chr3 (194-261)||(47212255-47212322)
chr3 (14-252)||(26713664-26713902)
[»] chr7 (7 HSPs)
chr7 (228-369)||(6609317-6609458)
chr7 (228-369)||(6624663-6624804)
chr7 (191-305)||(21130440-21130554)
chr7 (194-270)||(18658605-18658681)
chr7 (194-261)||(29213017-29213084)
chr7 (191-245)||(21098712-21098766)
chr7 (191-305)||(21123312-21123426)
[»] chr4 (2 HSPs)
chr4 (4-93)||(39132397-39132486)
chr4 (191-252)||(39132235-39132296)
[»] chr1 (1 HSPs)
chr1 (208-245)||(11791111-11791148)
[»] chr2 (1 HSPs)
chr2 (61-97)||(23466619-23466655)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 47193831 - 47193463
Alignment:
Q  1 aagcaaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193831 aagcaaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattctt 47193732  T
Q  101 gaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193731 gaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgag 47193632  T
Q  201 gtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193631 gtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatc 47193532  T
Q  301 aagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatg 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193531 aagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatg 47193463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 9792698 - 9792564
Alignment:
Q  234 actcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaaga 333  Q
    |||||||| |||||||||| |||||||||| |||| ||||| |||  ||||| |||||||||||||||| |||||||||||||||||||||  |||| ||    
T  9792698 actcttcaagtaaataagcgaaacctttagttgttgcaacaactatcttaaatctcttattccaatcaactgaattagaacatagattctcaactaatga 9792599  T
Q  334 accatgttctatatactcatagaccaaaagcctat 368  Q
    ||||||||| ||||||||||| |||||||| ||||    
T  9792598 accatgttccatatactcataaaccaaaagtctat 9792564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 26698512 - 26698750
Alignment:
Q  14 ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaac 113  Q
    ||||| ||||||||||| ||||||||||||||  | |  ||  ||||||||||||||||||| ||||||||||||||||  || || || |||   |||     
T  26698512 ccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaacctcttgtccctcgaatcctcgagaaatttgaat 26698611  T
Q  114 tatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcaca 213  Q
    ||||| | ||||  ||||||||||| || || ||||||||||| || ||||| |||||| |||  | |||||  |  || ||||| || || | ||| ||    
T  26698612 tatcaaggtcattcctattcaatagcttagacaaaccaaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgca 26698711  T
Q  214 atgtaaaacccattccaaacactcttcatgtaaataagc 252  Q
    ||| |||| ||| |||||||||||||| |||||||||||    
T  26698712 atgcaaaatccactccaaacactcttcgtgtaaataagc 26698750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 26733675 - 26733913
Alignment:
Q  14 ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaac 113  Q
    ||||| ||||||||||| ||||||||||||||  | |  ||  ||||||||||||||||||| ||||||||||||||||  || || || |||   |||     
T  26733675 ccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaacctcttgtccctcgaatcctcgagaaatttgaat 26733774  T
Q  114 tatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcaca 213  Q
    ||||| | ||||  ||||||||||| || || ||||||||||| || ||||| |||||| |||  | |||||  |  || ||||| || || | ||| ||    
T  26733775 tatcaaggtcattcctattcaatagcttagacaaaccaaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgca 26733874  T
Q  214 atgtaaaacccattccaaacactcttcatgtaaataagc 252  Q
    ||| |||| ||| |||||||||||||| |||||||||||    
T  26733875 atgcaaaatccactccaaacactcttcgtgtaaataagc 26733913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 26736900 - 26737138
Alignment:
Q  14 ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaac 113  Q
    ||||| ||||||||||| ||||||||||| ||  | |  ||  ||||||||||||||||||| ||||||| ||||||||  || ||||| ||    |||     
T  26736900 ccatagctataaacatccacttttgaagtgatttgcatgttgaaaacccattcaggtgccatgtaacctcgtgtccctcgaatccttgagaagtttgaat 26736999  T
Q  114 tatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcaca 213  Q
    ||||| | ||||  || |||||||| || || ||||||||||| |||||||| ||| || |||  | |||||  |  || ||||| || || | ||| ||    
T  26737000 tatcatgctcattcctgttcaatagcttagacaaaccaaaatctgcaaccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgca 26737099  T
Q  214 atgtaaaacccattccaaacactcttcatgtaaataagc 252  Q
    ||| |||| ||| ||||||||||||||||||||||||||    
T  26737100 atgcaaaatccactccaaacactcttcatgtaaataagc 26737138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 249
Target Start/End: Original strand, 26750879 - 26751071
Alignment:
Q  57 aaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctctattcaatagttttgataaaccaaaatc 156  Q
    ||||||||||||||||||| ||||||||||||||||  || || || |||   ||| ||||| | ||||| ||||||||||| || || | |||||||||    
T  26750879 aaacccattcaggtgccatgtaacctcttgtccctcgaatcctcgagaaatttgaattatcaaggtcatccctattcaatagcttggacagaccaaaatc 26750978  T
Q  157 agcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaata 249  Q
    ||| ||||| |||||  |||  | |||||  |  || ||||| ||||| | ||| ||||| |||| ||| |||||||| ||||| ||||||||    
T  26750979 agctaccttcggttggtaatcggagtcaacaagtatgttttgcggttttatatcgcaatgcaaaatccactccaaacattcttcgtgtaaata 26751071  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 47212255 - 47212322
Alignment:
Q  194 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 261  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  47212255 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagccaaaccttt 47212322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 26713664 - 26713902
Alignment:
Q  14 ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctcttattcttgaaaaagcagaac 113  Q
    ||||| ||||||||||| ||||||||||| ||  | |  ||  ||||||||||||||||||| ||||||| ||||||||  || ||||| ||    |||     
T  26713664 ccatagctataaacatccacttttgaagtgatttgcatgttgaaaacccattcaggtgccatgtaacctcgtgtccctcgaatccttgagaagtttgaat 26713763  T
Q  114 tatcacgttcatctctattcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcaca 213  Q
    ||||| | ||||  || |||||||| || || ||||||||||| |||||||| ||| || |||    |||||  |  || ||||| || || | ||| ||    
T  26713764 tatcatgctcattccttttcaatagcttagacaaaccaaaatctgcaaccttaggtcgataatcatagtcaacaagtatgttttgcggctttatatcgca 26713863  T
Q  214 atgtaaaacccattccaaacactcttcatgtaaataagc 252  Q
    ||| |||| ||| ||||||||||||||||||||||||||    
T  26713864 atgcaaaatccactccaaacactcttcatgtaaataagc 26713902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 228 - 369
Target Start/End: Original strand, 6609317 - 6609458
Alignment:
Q  228 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 327  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6609317 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6609416  T
Q  328 taaagaaccatgttctatatactcatagaccaaaagcctatg 369  Q
    ||| ||||||||||| ||||||||||| |||| |||||||||    
T  6609417 taatgaaccatgttccatatactcataaaccagaagcctatg 6609458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 228 - 369
Target Start/End: Complemental strand, 6624804 - 6624663
Alignment:
Q  228 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 327  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6624804 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6624705  T
Q  328 taaagaaccatgttctatatactcatagaccaaaagcctatg 369  Q
    ||| |||||||||||  |||||||||| |||| |||||||||    
T  6624704 taatgaaccatgttccgtatactcataaaccagaagcctatg 6624663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 305
Target Start/End: Original strand, 21130440 - 21130554
Alignment:
Q  191 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 290  Q
    ||||||||||| || | ||||||||| |||| |||||||||||| |||||||||| ||| || ||| || |||||||||| | ||| | || | |||| |    
T  21130440 atattttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagatatgctaaaactctagctgttcctaaagcaatatcataccttt 21130539  T
Q  291 tattccaatcaagtg 305  Q
    || ||||||||||||    
T  21130540 tagtccaatcaagtg 21130554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 18658605 - 18658681
Alignment:
Q  194 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttcc 270  Q
    |||||||| || | ||||||||| |||| |||||||||||| |||||||||| |||||| | | |||||||||||||    
T  18658605 ttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcc 18658681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 29213017 - 29213084
Alignment:
Q  194 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 261  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||  | |||||||||||||||    
T  29213017 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcataaatataagccaaaccttt 29213084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 21098766 - 21098712
Alignment:
Q  191 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgta 245  Q
    |||||||| || || | |||||||||||||| |||||||||||| ||||||||||    
T  21098766 atattttgcggctttatatcacaatgtaaaatccattccaaacattcttcatgta 21098712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 305
Target Start/End: Original strand, 21123312 - 21123426
Alignment:
Q  191 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 290  Q
    ||||||||||| || | ||||||||| |||| ||| |||| ||| |||||||||| |||||| | | || |||||||||| | ||| | || | |||| |    
T  21123312 atattttgaggctttatatcacaatgcaaaatccactccatacattcttcatgtagataagcaagaactctagctgttcctaaagcaatatcataccttt 21123411  T
Q  291 tattccaatcaagtg 305  Q
    || ||||||||||||    
T  21123412 tactccaatcaagtg 21123426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 39132486 - 39132397
Alignment:
Q  4 caaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctct 93  Q
    ||||||||||||||||||||||||||| ||||| || || ||  | | |||  ||||||||||||| |||||||| |||||||| |||||    
T  39132486 caaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaacccattcaggagccatatatcctcttgttcctct 39132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 39132296 - 39132235
Alignment:
Q  191 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 252  Q
    ||||||||||| || | |||||||||||||| ||| |||||||| |||||||||| ||||||    
T  39132296 atattttgaggctttatatcacaatgtaaaatccactccaaacattcttcatgtagataagc 39132235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Original strand, 11791111 - 11791148
Alignment:
Q  208 atcacaatgtaaaacccattccaaacactcttcatgta 245  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  11791111 atcacaatgcaaaacccattccaaacactcctcatgta 11791148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 23466619 - 23466655
Alignment:
Q  61 ccattcaggtgccatataacctcttgtccctcttatt 97  Q
    |||||| |||||||||||||||||||| |||||||||    
T  23466619 ccattctggtgccatataacctcttgttcctcttatt 23466655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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