View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_48 (Length: 372)
Name: NF0791_low_48
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 9443549 - 9443253
Alignment:
| Q |
13 |
aatataatttgaatgaattggttataaaaaattaatcatggctacatcagtgtttgttcgtatgtttcccaactctctgatttccggcttcgcaaaaatc |
112 |
Q |
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| T |
9443549 |
aatatagtttgaatgaattggttataaaaacttaatcatggctacatcagtgtttgttcgtatgtttcccaactctctgatttccggcttcgcaaaaatc |
9443450 |
T |
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| Q |
113 |
atggtagtataccaggttaacaaacatgcgctaaaactaaacgataaatttaagaataaaaatcaatggtagagacaaaaactataagttctagtttcga |
212 |
Q |
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| T |
9443449 |
atggtagtataccaggtttacaaacatgcgctaaaactaaaccataaatttaagaataaaaatcaatggtagagacaaaaactataagttctagtttcga |
9443350 |
T |
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| Q |
213 |
gttagaatcaactttggatgcaattttccataaaatcacatatcttagtcgttagatgaagatccaacgacctatatttcgagttatattttaaaac |
309 |
Q |
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| T |
9443349 |
gttagaatcaactttggaagcaattttccataaaatcacatatcttagtcgttagatgaagatccaacgacctatatttcgagttatattttaaaac |
9443253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 309
Target Start/End: Complemental strand, 9454661 - 9454517
Alignment:
| Q |
169 |
taaaaatcaatggtagagacaaaaactataagttctagtttcgagttagaatcaactttggatgcaattttccataaa----atcacatatcttagtcgt |
264 |
Q |
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| T |
9454661 |
taaatatcaattgtagagacaaaaaatacaaattctagtctcaatttataatcaatattggaggcaattttgcataaacacaattacgcatcttagtcat |
9454562 |
T |
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| Q |
265 |
tagatgaagatccaacgacctatatttcgagttatattttaaaac |
309 |
Q |
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| T |
9454561 |
tagatgaagatccaacgacctatatttcgagttatatttttaaac |
9454517 |
T |
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