View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_low_49 (Length: 372)

Name: NF0791_low_49
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_low_49
NF0791_low_49
[»] scaffold0657 (1 HSPs)
scaffold0657 (9-343)||(6744-7069)


Alignment Details
Target: scaffold0657 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 6744 - 7069
Alignment:
Q  9 caacaaaatagaagaaagcacatttataacattgatagcaagtagcaacatttatttccagccacaactacatctctacaactcaaataacaagagagnn 108  Q
    ||||||||||||||||||||||||||||| |||||||||||       | ||||||| |||| ||||||||||| ||||||||||||||||||||||       
T  6744 caacaaaatagaagaaagcacatttataaaattgatagcaa-------cctttattttcagcaacaactacatccctacaactcaaataacaagaga--- 6833  T
Q  109 nnnnnnntacatgcccttatttgnnnnnnn--tatatctatataatagcaagctttaatgatggtcatgattaattattttaaacagaatccaatatact 206  Q
           ||||||||||||| |          |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6834 -aaaaaatacatgcccttatgtaaaaaaataatatatctaaataatagcaggctttaatgatggtcatgattaattattttaaacagaatccaaaatact 6932  T
Q  207 caccaaatcataaaccctttcattttcttctcccaaataaatctatacaaactttaacttaacaagaaatgggttaatttaataatcttaacttcataca 306  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6933 caccaaatcagaaaccctttcattttcttctcccaaataaatctatacagactttaacttaacaagaaatgggttaatttaataatcttaacttcataca 7032  T
Q  307 gttatttcattatctttcacaaaaacaaatccaaaac 343  Q
     ||||||||||||||||||||||||||||||||||||    
T  7033 attatttcattatctttcacaaaaacaaatccaaaac 7069  T

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