View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_50 (Length: 365)
Name: NF0791_low_50
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 21 - 359
Target Start/End: Original strand, 48597555 - 48597893
Alignment:
| Q |
21 |
catgctctctctcactacatttaatgatacacagaaaagcttgttggtttgttgtatttggatctaatgtttcagttagccttgttgggttgatgtcgat |
120 |
Q |
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| T |
48597555 |
catgctctctctcactacatttaatgatacacagaaaagcttgttggtttgttgtatttggatctaatgtttcagttagccttgttgggttgatgtcgat |
48597654 |
T |
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| Q |
121 |
cacaacacaacactactagacatttcgctttgcagtttgcagatagatcataaaaaggtgcagaactaaacttgcccacctgtcaaataatttactagct |
220 |
Q |
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| T |
48597655 |
cacaacacaacactactagacatttcgctttgcagtttgcagatagatcataaaaaggtgcagaactaaacttgcccacctgtcaaataatttactagct |
48597754 |
T |
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| Q |
221 |
agtgtgcttaattccttcatttaagctttacccatccaatccatttgtatattgtactgtatgtataataattaatgaatccttttccacctttgaaact |
320 |
Q |
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| T |
48597755 |
agtgtgcttaattccttcatttaagctttacccatccaatccatttgtttattgtactgtatgtataataattaatgaatccttttccacctttgaaact |
48597854 |
T |
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| Q |
321 |
ttttgtcttctctcctttcagcagtcaccttcttttctg |
359 |
Q |
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| T |
48597855 |
ttttgtcttctctcctttcagcagtcaccttcttgtctg |
48597893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 44950308 - 44950254
Alignment:
| Q |
171 |
taaaaaggtgcagaactaaacttgcccacctgtcaaataatttactagctagtgtgct |
228 |
Q |
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| T |
44950308 |
taaaaaggtgcagaactaaactt---catgtgtcaaataatttactagctagtgtgct |
44950254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 8773788 - 8773743
Alignment:
| Q |
83 |
tctaatgtttcagttagccttgttgggttgatgtcgatcacaacac |
128 |
Q |
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| T |
8773788 |
tctaatgtttctgttagccttgttgggttgatgtggttcacaacac |
8773743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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