View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_58 (Length: 342)
Name: NF0791_low_58
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_58 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 29 - 342
Target Start/End: Original strand, 6723140 - 6723453
Alignment:
| Q |
29 |
aggtccagtggttgagatgaaggaatattggttgttaaaaatagaccagtcttgcctaaagaaaatgtgttgtttatgattaattcttttcatgtatgca |
128 |
Q |
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| T |
6723140 |
aggtccagtggttgagatgaaggaatattggttgttaaaaatagaccaggcttgcctaaagaaaatgtattgtttatgattaattcctttcatgtatgca |
6723239 |
T |
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| Q |
129 |
aaaggactcagctagcgagatgtgtaatctgcttaagttttgatatggagattatttatatttcaattatggagttaaacatagttagattaatggtctt |
228 |
Q |
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| T |
6723240 |
aaagttctcagctagcgagatgtataatctgcttaagttttgatatggagattatttgtatttcacttatggagttaaacatagttagattaatggtctt |
6723339 |
T |
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| Q |
229 |
gaaagtcattaagcaaaattttatccaannnnnnnctcaacatttaatggagtgtaatatctgttggagattgatatttttgctgtttttgttcattatt |
328 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6723340 |
gaaagtcattaagcaaaattttatccaatctttttctcaacatttaatggagtgtaatatctgttggagattgatatttttgctatttttgttcattatt |
6723439 |
T |
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| Q |
329 |
atctactgttgttt |
342 |
Q |
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| T |
6723440 |
atctactgttgttt |
6723453 |
T |
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