View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_63 (Length: 331)
Name: NF0791_low_63
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 20486789 - 20486567
Alignment:
| Q |
10 |
aagaatatgacttttcctcatagtaacttgtgcaccaagaatatgactttagctaataaaaaagcatgnnnnnnnaggaaaagcctaaaatgtataagac |
109 |
Q |
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| T |
20486789 |
aagaatatgacttttcctcatagtaacttgtgcaccaagaatatgactttagctaatagaaaagcatgttttt--agtaaaagcctaaaatgtataagac |
20486692 |
T |
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| Q |
110 |
atgccaaatgagaacaacttttgggaagttccataaggtgtaaattaaagtaaagattcacaaagaatgctcctagtatgcagatgtaacacatcaagaa |
209 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20486691 |
atgccaaatgagaacaacttctgggaagttccataaggtgtaaattaaagtaaagattcacaaagaatactcctagtatgcagatgtaacacatcaagaa |
20486592 |
T |
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| Q |
210 |
tctgagtttgttaagctgttaaagg |
234 |
Q |
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||||||||||||||||||||||||| |
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| T |
20486591 |
tctgagtttgttaagctgttaaagg |
20486567 |
T |
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