View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0791_low_74 (Length: 316)

Name: NF0791_low_74
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0791_low_74
NF0791_low_74
[»] chr5 (3 HSPs)
chr5 (62-316)||(39806314-39806568)
chr5 (261-316)||(26203787-26203841)
chr5 (66-96)||(39806191-39806221)
[»] chr4 (1 HSPs)
chr4 (6-58)||(42796780-42796832)
[»] chr8 (1 HSPs)
chr8 (268-311)||(17777820-17777863)
[»] chr1 (3 HSPs)
chr1 (268-311)||(19440067-19440110)
chr1 (276-308)||(18089018-18089050)
chr1 (268-304)||(27091290-27091326)
[»] chr7 (1 HSPs)
chr7 (246-308)||(34877252-34877313)
[»] chr3 (1 HSPs)
chr3 (268-314)||(4478163-4478209)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 62 - 316
Target Start/End: Original strand, 39806314 - 39806568
Alignment:
Q  62 ctagggtcaatttgaattatacaattcgaacaattctgatatctttcagatcatatggtccgaacccgttcagattatggacggttgcttggtcagtaag 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39806314 ctagggtcaatttgaattatacaattcgaacaattctgatatctttcaaatcatatggtccgaaccagttcagattatggacggttgcttggtcagtaag 39806413  T
Q  162 actgcctcattgaacatgtgttttttgggctggtcacttttaccctcattgatggattgttacactctatgaactcgtttgtcgcaaatttcccctacaa 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  39806414 actgcctcattgaacatgtgttttttgggctggtcacttttaccctcattgatggattgttacactctatgaactcatttgtcacaaatttcccctacaa 39806513  T
Q  262 aatattcacccatccttcacaaattcccattccatctcacattctcttcttctct 316  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39806514 aatactcacccatccttcacaaattcccattccatctcacattctcttcttctct 39806568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 26203841 - 26203787
Alignment:
Q  261 aaatattcacccatccttcacaaattcccattccatctcacattctcttcttctct 316  Q
    |||||| |||||||| ||||||||||| |||||||||||||||||| | |||||||    
T  26203841 aaatatccacccatc-ttcacaaattctcattccatctcacattctatccttctct 26203787  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 39806191 - 39806221
Alignment:
Q  66 ggtcaatttgaattatacaattcgaacaatt 96  Q
    |||||||||||||||||||||||||||||||    
T  39806191 ggtcaatttgaattatacaattcgaacaatt 39806221  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 42796780 - 42796832
Alignment:
Q  6 agcatctaccatcccctttgttagatgccacttctgtgcgtcttttgctgcaa 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42796780 agcatctaccatcccctttgttagatgccacttctgtgcgtcttttgctgcaa 42796832  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 17777820 - 17777863
Alignment:
Q  268 cacccatccttcacaaattcccattccatctcacattctcttct 311  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  17777820 cacccatccttcacaaatcctcattccatctcacattctcttct 17777863  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 19440110 - 19440067
Alignment:
Q  268 cacccatccttcacaaattcccattccatctcacattctcttct 311  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  19440110 cacccatccttcacaaatcctcattccatctcacattctcttct 19440067  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 18089018 - 18089050
Alignment:
Q  276 cttcacaaattcccattccatctcacattctct 308  Q
    |||||||||||| ||||||||||||||||||||    
T  18089018 cttcacaaattctcattccatctcacattctct 18089050  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 27091326 - 27091290
Alignment:
Q  268 cacccatccttcacaaattcccattccatctcacatt 304  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  27091326 cacccatccttcacaaattctcattctatctcacatt 27091290  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 34877313 - 34877252
Alignment:
Q  246 caaatttcccctacaaaatattcacccatccttcacaaattcccattccatctcacattctct 308  Q
    ||||||||||||| ||| || | || |||||||||||||||| ||||||||||||||||||||    
T  34877313 caaatttcccctataaa-tacttactcatccttcacaaattctcattccatctcacattctct 34877252  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 4478163 - 4478209
Alignment:
Q  268 cacccatccttcacaaattcccattccatctcacattctcttcttct 314  Q
    |||| ||||||||||||||  ||||||||||||||||||||| ||||    
T  4478163 caccaatccttcacaaattatcattccatctcacattctctttttct 4478209  T

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