View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_76 (Length: 311)
Name: NF0791_low_76
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 28168604 - 28168886
Alignment:
| Q |
16 |
atttttaacaaggatgtctttacatggtgtattcaactttcgtttcctagcttcttcaaacttcttaaattcatccatcatgtctcctatcttgtcgaca |
115 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28168604 |
atttctaacaaggatgtccttacatggtgtattcaactttcttttcctagcttcttcaaacttcttaaattcatccatcatgtctcctatcttgtcgaca |
28168703 |
T |
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| Q |
116 |
accactcttatcttctcgtgtatatcctcatctcagtagaagccatacacttatgaagagttgttttattctctttctttattaattctttcaatatcgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28168704 |
accactcttatcttctcgtgtatatcctcatctcagtagaagccatacatttatgaagagttgttttattctctttctttattaactctttcaatatcgt |
28168803 |
T |
|
| Q |
216 |
ttgatgattcctaatgtttcccaaaatatacgagttcaattctcttgtatatctttccaatttcatcaacgtttcatgcacct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28168804 |
ttgatgattcctaatgtttcccaaaatatacgagttcaattctcttgtatatcttttcaatttcatcaacgtttcatgcacct |
28168886 |
T |
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