View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_81 (Length: 302)
Name: NF0791_low_81
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 23782034 - 23782211
Alignment:
| Q |
30 |
aagagtagttagggaaccaacagctagaagagttcctccctcaacgttaatctcttgaagcaagagaatacagtcatgaatctcagacaagctaagctct |
129 |
Q |
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| T |
23782034 |
aagagtagttagggaaccaacagctggaagagttcctccctcaacgttaatctcttgaagcaagagaatacagtcatgaatctcagacaagctaagctct |
23782133 |
T |
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| Q |
130 |
gctaaattcagtttccatcaacataaataaaatatcatagaagttggacagtcatgagattcttataaatagttatgg |
207 |
Q |
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| T |
23782134 |
gctaaattcagtttccatcaacataaataaaatatcatagaagttggacagtcatgagattcttataaatagttatgg |
23782211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 199 - 302
Target Start/End: Original strand, 23782392 - 23782495
Alignment:
| Q |
199 |
tagttatggaaacatgtcttttgttgatgttgattttgtttataagacatttaagaattagaacacgttaattagacacaagtaatcattttaattctat |
298 |
Q |
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| T |
23782392 |
tagttttggaaacatgtcttttgttgatgttgattttgtttataagacatttaagaattagaacacgttaattagacacaagtaatccttttaattctat |
23782491 |
T |
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| Q |
299 |
tcca |
302 |
Q |
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|||| |
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| T |
23782492 |
tcca |
23782495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 32064677 - 32064709
Alignment:
| Q |
60 |
agttcctccctcaacgttaatctcttgaagcaa |
92 |
Q |
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| T |
32064677 |
agttcctccctcaacgttaatcacttgaagcaa |
32064709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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