View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_9 (Length: 596)
Name: NF0791_low_9
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 39188301 - 39188887
Alignment:
| Q |
1 |
acttgtttaccttctcaaatcttttagaagctcttgcatattcacgacgtcagtgcaatgattcccctttttctttcttcttatgagcagcttctatctt |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39188301 |
acttggttaccttctcaaatcttttagaagctcttgcatattcacgacgtcggtgcaatgattcccctttttctttcttcttatgagcagcttctcactt |
39188400 |
T |
|
| Q |
101 |
ctctttattgttcatgtccgagatctccttggtataaatgcagcagaaagcggcaatggtatcaaaccnnnnnnntgttgttgagagacggaagtcagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39188401 |
ctctttattgttcatgtccgagatctccttggtataaatgcagcagaaagcggcaatggtatcaaaccaaaaaaatgttgttgagagacggaagtcagaa |
39188500 |
T |
|
| Q |
201 |
aagggaagaagaggnnnnnnnnnnnnnnnnnnnnngacatcattcttatttaaatccttg--aaacaatgttctaaaaacacgttaggaatttgaaaatt |
298 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
39188501 |
aagggaagaagaggaaaaaataaataaaaataaaagacatcattcttatttaaatccttgctaaacaatgttctaaaaacacgtgaggaatttgaaaatt |
39188600 |
T |
|
| Q |
299 |
attcatagaagagtgtaacgtttaaccctgctaaccaatgctacatattttcttaggaatccttaacaaccagagcccttagagcacagtgaagcatttg |
398 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39188601 |
attcatagaagagtgtaacgtttaaccctgctaaccaatgctacatattttcttaggaatccttaacaaccagagcccttagagcacagttaagcatttg |
39188700 |
T |
|
| Q |
399 |
actctttatcgtgccaagaaaggctttccaaattaactatagcaagacttccttgctaaaccaagaacatgaaaaacagtagaaaaatactgaacttgga |
498 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39188701 |
actctttatcgtgccaagaaaggctttccaaattaactatagcaagacttccttgctaaaccaagaacatgaaaaacagtagaaaaatactgaacttgga |
39188800 |
T |
|
| Q |
499 |
aatagcatagaaacaaaaggtagttccctgctatgttttgaaattttattctattcttattcttgtgaattttgataagcaacagct |
585 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39188801 |
aatagcatataaacaaaaggtagttccctgctatgttttgaaattttattctattcttattcttgtgaattttgataagcaacagct |
39188887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 297 - 461
Target Start/End: Complemental strand, 3159261 - 3159093
Alignment:
| Q |
297 |
ttattcatagaagagtgtaacgtttaaccctgctaaccaatgctacatattttcttaggaatcc-ttaacaaccagagcccttagagcacagtgaagcat |
395 |
Q |
| |
|
||||| || ||| ||||||| ||||||| ||||||||||||||||||| ||||| ||||| || ||||| || |||||||| | | |||||| |||||| |
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|
| T |
3159261 |
ttatttattgaaaagtgtaaagtttaacactgctaaccaatgctacattatttctaaggaaccctttaaccacaagagccctgaaaacacagttaagcat |
3159162 |
T |
|
| Q |
396 |
ttgactctttatcgtgccaagaaa---ggctttccaaattaactatagcaagacttccttgctaaacca |
461 |
Q |
| |
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||| ||||||| ||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||| |
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|
| T |
3159161 |
ttgcttctttattgtgccaagaaaaacagctttgcaaattaactataacaacacttccttgctaaacca |
3159093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 2875831 - 2875868
Alignment:
| Q |
7 |
ttaccttctcaaatcttttagaagctcttgcatattca |
44 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
2875831 |
ttaccttctgaaatcttttagaagctcttgcatattca |
2875868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 2890311 - 2890348
Alignment:
| Q |
7 |
ttaccttctcaaatcttttagaagctcttgcatattca |
44 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
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|
| T |
2890311 |
ttaccttctgaaatcttttagaagctcttgcatattca |
2890348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 3144957 - 3144920
Alignment:
| Q |
7 |
ttaccttctcaaatcttttagaagctcttgcatattca |
44 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3144957 |
ttaccttctgaaatcttttagaagctcttgcatattca |
3144920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 3494626 - 3494660
Alignment:
| Q |
310 |
agtgtaacgtttaaccctgctaaccaatgctacat |
344 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
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|
| T |
3494626 |
agtgtaacatttaaccctgctaaccaatgctacat |
3494660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 2795829 - 2795788
Alignment:
| Q |
77 |
cttcttatgagcagcttctatcttctctttattgttcatgtc |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||| | |||||||||| |
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|
| T |
2795829 |
cttcttaagagcagcttctatcttctcttcagtgttcatgtc |
2795788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 2795899 - 2795862
Alignment:
| Q |
7 |
ttaccttctcaaatcttttagaagctcttgcatattca |
44 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||| |
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|
| T |
2795899 |
ttaccttctgatatcttttagaagctcttgcatattca |
2795862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 2890389 - 2890434
Alignment:
| Q |
85 |
gagcagcttctatcttctctttattgttcatgtccgagatctcctt |
130 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||| | |||||| |
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|
| T |
2890389 |
gagcagcttctatcttctcttcagtgttcatgtccgatacctcctt |
2890434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 3144879 - 3144834
Alignment:
| Q |
85 |
gagcagcttctatcttctctttattgttcatgtccgagatctcctt |
130 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||| | |||||| |
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| T |
3144879 |
gagcagcttctatcttctcttcagtgttcatgtccgatacctcctt |
3144834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 3159460 - 3159415
Alignment:
| Q |
85 |
gagcagcttctatcttctctttattgttcatgtccgagatctcctt |
130 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||| | |||||| |
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|
| T |
3159460 |
gagcagcttctatcttctcttcagtgttcatgtccgatacctcctt |
3159415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 4415995 - 4415950
Alignment:
| Q |
74 |
tttcttcttatgagcagcttctatcttctctttattgttcatgtcc |
119 |
Q |
| |
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|||||||| | ||||||||||||| ||||||| ||||||||||||| |
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|
| T |
4415995 |
tttcttctcaggagcagcttctattttctcttgattgttcatgtcc |
4415950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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