View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791_low_99 (Length: 269)
Name: NF0791_low_99
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791_low_99 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 3687872 - 3687992
Alignment:
| Q |
18 |
aaaaatagagaccattttgagttactaataaactcagggatcaatttaagaattttgatataaagatagagaccaatttattgtattactcgaaaataaa |
117 |
Q |
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| T |
3687872 |
aaaaacagagaccattttgagttactaataaactcagggaccaatttaagagttttgatataaagacagagaccaatttattgtattactcgaaaataaa |
3687971 |
T |
|
| Q |
118 |
ttgagcaagaagtcatgttaa |
138 |
Q |
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||||||||||||||||||||| |
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| T |
3687972 |
ttgagcaagaagtcatgttaa |
3687992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 3688042 - 3688078
Alignment:
| Q |
135 |
ttaaactgaaaataaaaccttttaaatttttgaagaa |
171 |
Q |
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| T |
3688042 |
ttaaactgaaaataaaaccttttaaatttttgaagaa |
3688078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 30122829 - 30122901
Alignment:
| Q |
24 |
agagaccattttgagttactaataaactcagggatcaatttaagaattttgatataaagatagagaccaattta |
97 |
Q |
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| T |
30122829 |
agagaccattttgagttattaataaagttagggaccaatttgagaa-tttgatacaaagacaggaaccaattta |
30122901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 6169450 - 6169383
Alignment:
| Q |
28 |
accattttgagttactaataaactcagggatcaatttaagaattttgatataaagatagagaccaattt |
96 |
Q |
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| T |
6169450 |
accattttgagttattaataaagtcattgaccaaattgagaatttag-tataaagatagagaccaattt |
6169383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 27133900 - 27133830
Alignment:
| Q |
26 |
agaccattttgagttactaataaactcagggatcaatttaagaattttgatataaagatagagaccaattta |
97 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||| |||| || ||||| || |||||||||| |
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| T |
27133900 |
agaccattttgagttattaataaagtcagggatcaatttaagaa-tttggtacaaagacagggaccaattta |
27133830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 35316131 - 35316176
Alignment:
| Q |
27 |
gaccattttgagttactaataaactcagggatcaatttaagaattt |
72 |
Q |
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| T |
35316131 |
gaccattttgagttattaatagagtcagggaccaatttaagaattt |
35316176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 32047316 - 32047245
Alignment:
| Q |
24 |
agagaccattttgagttactaataaactcagggatcaatttaagaattttgatataaagatagagaccaattt |
96 |
Q |
| |
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|||||||||||||||||| ||||| | |||| || |||||| |||| |||| || |||||||| ||||||||| |
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| T |
32047316 |
agagaccattttgagttattaatagagtcagagaccaatttgagaa-tttggtacaaagatagggaccaattt |
32047245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 43049385 - 43049429
Alignment:
| Q |
28 |
accattttgagttactaataaactcagggatcaatttaagaattt |
72 |
Q |
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|||||||||| ||| ||||| |||||| ||||||||||||||||| |
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| T |
43049385 |
accattttgaattattaatagactcagagatcaatttaagaattt |
43049429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 51103444 - 51103361
Alignment:
| Q |
27 |
gaccattttgagttactaataaactcagggatcaatttaagaattttgatataaagatagagaccaatttattgtattactcgaa |
111 |
Q |
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||||||||||| ||| ||||| | ||||||| |||||| |||| |||| || ||||| ||||||||||||| || ||||||||| |
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| T |
51103444 |
gaccattttgaattattaatagagtcagggaccaatttgagaa-tttggtacaaagacagagaccaatttagtgatttactcgaa |
51103361 |
T |
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