View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_high_17 (Length: 251)
Name: NF0792_high_17
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 17490372 - 17490575
Alignment:
| Q |
40 |
tatcaattttgatgaacccattgacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
139 |
Q |
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| T |
17490372 |
tatcaattttgatgaacccattcacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
17490471 |
T |
|
| Q |
140 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17490472 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
17490571 |
T |
|
| Q |
240 |
tgct |
243 |
Q |
| |
|
|||| |
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|
| T |
17490572 |
tgct |
17490575 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 17562842 - 17562639
Alignment:
| Q |
40 |
tatcaattttgatgaacccattgacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
139 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17562842 |
tatcaattttgatgaacccattcacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
17562743 |
T |
|
| Q |
140 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17562742 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
17562643 |
T |
|
| Q |
240 |
tgct |
243 |
Q |
| |
|
|||| |
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|
| T |
17562642 |
tgct |
17562639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 39323255 - 39323287
Alignment:
| Q |
166 |
aaattctagatctagatgaatttgaaaaaattg |
198 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
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|
| T |
39323255 |
aaattctagatctagatgaatttgacaaaattg |
39323287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 53651585 - 53651342
Alignment:
| Q |
1 |
aaaaacaacattttgaacaatcatatgactctccata-cttatcaattttgatgaacccattgacggatcatcttctccaagtcactaacaacaatttca |
99 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |
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|
| T |
53651585 |
aaaaacaacattttgaacaaccatatgactctccatagcctatcaattttgatgaacccattcacggttcatcttctccaagtcactaacagcaatttca |
53651486 |
T |
|
| Q |
100 |
agacagatctgagaaaatcattccattgagattattaaccctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgt |
199 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | |||||||| |
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|
| T |
53651485 |
agacagatatgagaaaatcattccattgagattattaaccctagctgtaagtattttatgaaattgtaattctagatctagatgaattttacaaaattgt |
53651386 |
T |
|
| Q |
200 |
ttaatatgacaattaaacttaaaaatgaaattccttcctatgct |
243 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
53651385 |
ttaatatgacaattaaactcaaaaatgaaattccttcctatgct |
53651342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 33960171 - 33960137
Alignment:
| Q |
166 |
aaattctagatctagatgaatttgaaaaaattgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
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|
| T |
33960171 |
aaattctagatctagatgaatttgacaaaattgtt |
33960137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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