View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_1 (Length: 697)
Name: NF0792_low_1
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 62 - 669
Target Start/End: Complemental strand, 13398553 - 13397944
Alignment:
| Q |
62 |
tagcaactgataggttttagtgtaacattgaatgcctctcttatgtgtgtgagggatgaagacgaaacttgtggtcctttcattgccttgaattggctcc |
161 |
Q |
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| T |
13398553 |
tagcaactgataggttt-agtgtaacattgaatgtctctcttatgtgtttgagggatgaagacgaaacttgtggtcctttcattgccttgaattggctcc |
13398455 |
T |
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| Q |
162 |
atttttaatttgaagaagtttgattttgaattgattctaaataagtgtttgattatgaattttagagctatacttttgtttatgaagttaaattagtcca |
261 |
Q |
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| T |
13398454 |
atttttcatttgaagaagtttgattttgaattgattctaaacaattgtttgattatgaattttagagctatacttttttttatgaagttaaactagtcta |
13398355 |
T |
|
| Q |
262 |
tcaaaattggtttcaaagagaatcgaacctaatacttaaagaaaa--acactttaagatcacaagtcaacactatcatactaacttaaatggatcaattt |
359 |
Q |
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| T |
13398354 |
tcaaaattggtttcaaagagaatcgaacatgatacttaaagagaagcacactttaagatcacaagtcaacactaccataccaacttaaatggatcaattt |
13398255 |
T |
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| Q |
360 |
taaagatatactaaatgatcgtacacaattattcttctagcaccttaaaaacacttatattgaattcgttagaatacaaac-aaaaggtcatattcctaa |
458 |
Q |
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| T |
13398254 |
tagagatatactaaatgatcgtacacaattattcttctagcaccttaaaaactcttatattgaattcgttagaatacaaaccaaaaggtcatatttctaa |
13398155 |
T |
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| Q |
459 |
ctagtgtccataatttggaccacatccatatcacatgtttatccacaatcaaaagaattttgattctataatttagccactttactataccttaaaaatt |
558 |
Q |
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| T |
13398154 |
ctagtgtccataatttggaccacatccatatcatatgtttatccacaatcaaaagaattttgattctataatttagccactttactataccttaaaaatt |
13398055 |
T |
|
| Q |
559 |
cgatccatttgaccaaaccaaaggatcaaactatactctctacaaatttattgactctattgttttagggttctcccttgcaacagttgtgatatgcctt |
658 |
Q |
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| T |
13398054 |
cgatccatttgaccaaaccaaaggatcaaactatactctctacaaatttattgactctattgttttagggttctcccttgcaacagttgtgatatgcctt |
13397955 |
T |
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| Q |
659 |
tgaggtgatct |
669 |
Q |
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| T |
13397954 |
tgaggtgatct |
13397944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 13398653 - 13398606
Alignment:
| Q |
13 |
aatattgtacttaaatcatgactatctgattgtagggacattttgatt |
60 |
Q |
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| T |
13398653 |
aatattgtacttaaatcatgactatctgattgtagggacattttgatt |
13398606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 594
Target Start/End: Complemental strand, 13394933 - 13394885
Alignment:
| Q |
546 |
taccttaaaaattcgatccatttgaccaaaccaaaggatcaaactatac |
594 |
Q |
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| T |
13394933 |
taccttaaaaatttggcccatttgaccaaaccaaaggatcaaactatac |
13394885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 7219882 - 7219928
Alignment:
| Q |
245 |
gaagttaaattagtccatcaaaattggtttcaaagagaatcgaacct |
291 |
Q |
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| T |
7219882 |
gaagctaaattagtccacctaaattggtatcaaagagaatcgaacct |
7219928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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