View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0792_low_12 (Length: 442)

Name: NF0792_low_12
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0792_low_12
NF0792_low_12
[»] chr2 (1 HSPs)
chr2 (75-431)||(9233977-9234333)


Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 75 - 431
Target Start/End: Original strand, 9233977 - 9234333
Alignment:
Q  75 agaagcaaaggaagagaatacagaagcacctaaagaaacagaggaatcagttgaagaagtgaaggaagaggctgcagcagtagtggaggagcctgtagca 174  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9233977 agaagccaaggaagagaatacagaagcacctaaagaaacagaggaatcagttgaagaagtgaaggaagaggctgcagcagtagtggaggagcctgtagca 9234076  T
Q  175 accattgaaaatgagtcagaagcaccagcagcagtaactgctgaggaagagaatgttaaaccagttgagtcagtggaagctccagcagcagaagaagttc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9234077 accattgaaaatgagtcagaagcaccagcagcagtaactgctgaggaagagaatgttaaaccagttgagtcagtggaagctccagcagcagaagaagttc 9234176  T
Q  275 cagttgagaaatctgaagcttaaaacaatggagggtgtgtgaatggaattgatgaaaaagagagattaaattaatggttctagttgttgggatcgggtct 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9234177 cagttgagaaatctgaagcttaaaacaatggagggtgtgtgaatggaattgatgaaaaagagagattaaattaatggttctagttgttgggatcgggtct 9234276  T
Q  375 accattttgcatgtcgaagttgaaaagttttctattattatttatttactttccttt 431  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9234277 accattttgcatgtcgaggttgaaaagttttctattattatttatttactttccttt 9234333  T

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