View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_13 (Length: 417)
Name: NF0792_low_13
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 88 - 407
Target Start/End: Original strand, 33927418 - 33927738
Alignment:
| Q |
88 |
gagcaagggtttatttttatttttgttatgttacaattggtttgagacnnnnnnnnnttatataaaggtttttggtatttttgggggaaattattcaatt |
187 |
Q |
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| T |
33927418 |
gagcaagggtttatttttatttttgttatgttacaattggtttgagacaaaaaaaaattatataaaggtttttggtatttttgggggaaattattcaatt |
33927517 |
T |
|
| Q |
188 |
ttcttccaactggannnnnnnggttctttatgatgttaatagagtgatttggttgctaatgcaactttttgaattgcttataacttgttactatttattc |
287 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33927518 |
ttcttccaactggattttttttgttctttatgatgttaatagagtgatttggttgctaatgcaactttttgaattgcttataacttgttactatttattc |
33927617 |
T |
|
| Q |
288 |
ttggtctttaaatgcaaaataaataatgtgggaataataatatttgattgctaaaactaattttcttgttagtnnnnnnngaaaagtatcaat-gatatg |
386 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
33927618 |
ttggtctttaaatgcaaaataaatgatgtgggaataataatatttgattgctaaaactaattttcttgttagtaaaaaaagaaaagtatctatggatatg |
33927717 |
T |
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| Q |
387 |
cttttgtttaaattgtctgtg |
407 |
Q |
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||||||||||||||||||||| |
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| T |
33927718 |
cttttgtttaaattgtctgtg |
33927738 |
T |
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