View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_14 (Length: 405)
Name: NF0792_low_14
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 392
Target Start/End: Original strand, 51213440 - 51213802
Alignment:
| Q |
30 |
atgctgagctcactaaaaatcctgatggagcttatagtcaactcattagattgcaagaaattaaaaaggattcatcagaacagtttggtgataatgactc |
129 |
Q |
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| T |
51213440 |
atgctgagctcactaaaaatcctgatggagcttatagtcaactcattagattgcaagaaattaaaaaggattcatcagaacagtttggtgataatgactc |
51213539 |
T |
|
| Q |
130 |
ggataagctagaaaactttgtagactctggaagagagtcaagccaaaggtctttaagccgtggatcatcagggattggaaacagtagtcacaactcattc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51213540 |
ggataagctagaaaactttgtagactctggaagagagtcaagccaaaggtctttaagccgcggatcatcagggattggaaacagtagtcacaactcattc |
51213639 |
T |
|
| Q |
230 |
atagcatcaaattctatgccagccacactagtaggagggtctgaagttgttccttcagcaaaagcatcatcaactaaaactcgagatgtcccattttttc |
329 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51213640 |
atagcatcaaattctatgccagacacactagtaggagggtctgaagttgttccttcagcaaaagcatcatcaactaaaactcgagatgccccattttttc |
51213739 |
T |
|
| Q |
330 |
tccttgtttatcttaacaagcctgaaatcccggtgttactcatgggagctctggcagcaacag |
392 |
Q |
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| T |
51213740 |
tccttgcttatcttaacaagcctgaaatcccggtgttactcatgggagctctggcagcaacag |
51213802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 34 - 168
Target Start/End: Complemental strand, 49736594 - 49736460
Alignment:
| Q |
34 |
tgagctcactaaaaatcctgatggagcttatagtcaactcattagattgcaagaaattaaaaaggattcatcagaacagtttggtgataatgactcggat |
133 |
Q |
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| T |
49736594 |
tgagctcaccaatgatcctgatggagcttatagtcagctcattaggctgcaagaaattaaaaaggattcatcagaacagcatggtgctaatgactcagat |
49736495 |
T |
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| Q |
134 |
aagctagaaaactttgtagactctggaagagagtc |
168 |
Q |
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|||||||||| |||||||| |||||||||||||| |
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| T |
49736494 |
aagctagaaacatttgtagaatctggaagagagtc |
49736460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 372
Target Start/End: Complemental strand, 49736448 - 49736328
Alignment:
| Q |
255 |
cactagtaggagggtctgaagttgttccttcagcaaaagcatcatc---aactaaaactcgagatgtcccattttttctccttgtttatcttaacaagcc |
351 |
Q |
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|||||| ||||| ||||||| || ||||||||||| ||||||| || ||| |||| ||||||||||||| ||| || | ||||||||||||||| |
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| T |
49736448 |
cactagaaggagtgtctgaatttcttccttcagcagcagcatcacataaaagtaagactccagatgtcccatttcttcgtctcgcttatcttaacaagcc |
49736349 |
T |
|
| Q |
352 |
tgaaatcccggtgttactcat |
372 |
Q |
| |
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||||||||||| | ||||||| |
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| T |
49736348 |
tgaaatcccggcgctactcat |
49736328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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