View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0792_low_17 (Length: 368)
Name: NF0792_low_17
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 48 - 358
Target Start/End: Complemental strand, 12268601 - 12268291
Alignment:
| Q |
48 |
cttctgtcatatcaaagtcttctactttcatttcattaggaattttccagtcgaagtggtaaagtaaggcagccagaggaagctcaatatttgctaaacc |
147 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268601 |
cttcagtcatatcaaagtcttctgctttcatttcattaggaattttccagtcgaagtggtaaagtaaggcagccagaggaagctcaatatttgctaaacc |
12268502 |
T |
|
| Q |
148 |
aaacaaaactcctggacacattcttcttcctcctccaaaaggaatgtactgaaagctattatcattcactttattaaaatcaaaaccagtattatcatga |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268501 |
aaacaaaactcctggacacattcttcttcctcctccaaaagggatgtactgaaagctattatcattcactttattaaaatcaaaaccagtattatcatga |
12268402 |
T |
|
| Q |
248 |
aacctctcaggtataaacttctctgcatcagaccaatgatttggatctctaccaattgcccatgcatttaatattaaattagtctttataggtatttcat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268401 |
aacctctcaggtataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgcatttaatattaaattagtctttataggtatttcat |
12268302 |
T |
|
| Q |
348 |
atccacctatg |
358 |
Q |
| |
|
|||| |||||| |
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|
| T |
12268301 |
atcctcctatg |
12268291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 47 - 358
Target Start/End: Original strand, 12425083 - 12425394
Alignment:
| Q |
47 |
acttctgtcatatcaaagtcttctactttcatttcattaggaattttccagtcgaagtggtaaagtaaggcagccagaggaagctcaatatttgctaaac |
146 |
Q |
| |
|
||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | |
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|
| T |
12425083 |
acttcagtcatatctaagtcctcttctttcatttcattaggaattttccagtcgaagtggtaaagtaatgcagccagaggaagctcaatatttgccaagc |
12425182 |
T |
|
| Q |
147 |
caaacaaaactcctggacacattcttcttcctcctccaaaaggaatgtactgaaagctattatcattcactttattaaaatcaaaaccagtattatcatg |
246 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12425183 |
caaacaaaattcctggacacattcttcttcctcctccaaaagggaaatactgaaagctattatcattcactttattaaaatcaaaaccagtactatcatg |
12425282 |
T |
|
| Q |
247 |
aaacctctcaggtataaacttctctgcatcagaccaatgatttggatctctaccaattgcccatgcatttaatattaaattagtctttataggtatttca |
346 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||| |
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| T |
12425283 |
aaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcatttaatattaagttagtttttaaaggtatttca |
12425382 |
T |
|
| Q |
347 |
tatccacctatg |
358 |
Q |
| |
|
|||||||||||| |
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|
| T |
12425383 |
tatccacctatg |
12425394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 48 - 358
Target Start/End: Original strand, 55954754 - 55955067
Alignment:
| Q |
48 |
cttctgtcatatcaaagtcttctactttcatttcattaggaattttccagtcgaagtggtaaagtaaggcagccagaggaagctcaatatttgctaaacc |
147 |
Q |
| |
|
|||| |||||||| ||||| ||| ||||||| ||||||||| || ||| | |||||| || | || ||||||||||||||||||||||| ||||| || |
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|
| T |
55954754 |
cttcagtcatatccaagtcctctggtttcattccattaggaagttcccaattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagcc |
55954853 |
T |
|
| Q |
148 |
aaacaaaactcctggacacattcttcttcctcctccaaaaggaatgtactgaaagctattatcatt---cactttattaaaatcaaaaccagtattatca |
244 |
Q |
| |
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|| | ||| ||| |||||||||||||||||||| |||||||| ||||| | ||||||||||| ||| || |||||||||||||||||||||| ||||| |
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| T |
55954854 |
aagcgaaattcccggacacattcttcttcctcccccaaaaggcatgtaatcaaagctattattattgttcaatttattaaaatcaaaaccagtactatca |
55954953 |
T |
|
| Q |
245 |
tgaaacctctcaggtataaacttctctgcatcagaccaatgatttggatctctaccaattgcccatgcatttaatattaaattagtctttataggtattt |
344 |
Q |
| |
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| |||||| |||||||||||||||| ||||||| ||||||| || |||||||| ||||||||||||||||||| ||| | |||||||||| ||||||| |
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| T |
55954954 |
ttaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctttattggtattt |
55955053 |
T |
|
| Q |
345 |
catatccacctatg |
358 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
55955054 |
catatccatctatg |
55955067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 48 - 358
Target Start/End: Original strand, 55958307 - 55958623
Alignment:
| Q |
48 |
cttctgtcatatcaaagtcttctactttcatttcattaggaattttccagtcgaagtggtaaagtaaggcagccagaggaagctcaatatttgctaaacc |
147 |
Q |
| |
|
|||| |||||||| ||||| ||| ||||||| ||||||||| || ||| | |||||| || | ||| ||||| ||||||||||||||||| ||||| || |
|
|
| T |
55958307 |
cttcagtcatatccaagtcctctggtttcattccattaggaagttcccaattgaagtgatacaataatgcagcaagaggaagctcaatattagctaagcc |
55958406 |
T |
|
| Q |
148 |
aaacaaaactcctggacacattcttcttcctcctccaaaaggaatgtactgaaagctattat------cattcactttattaaaatcaaaaccagtatta |
241 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||| | |||| |||||| |||||||||||||||||||||| || | |
|
|
| T |
55958407 |
aaacaaaattcctggacacattcttcttcctcctccaaaagggatgtattcaaagttattattattactattcactttattaaaatcaaaatatttactg |
55958506 |
T |
|
| Q |
242 |
tcatgaaacctctcaggtataaacttctctgcatcagaccaatgatttggatctctaccaattgcccatgcatttaatattaaattagtctttataggta |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| || |||||||| | |||||||| ||||||| || | |||||||||||| |||| |
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|
| T |
55958507 |
tcatgaaacctctcaggtataaacttctctgcatcataccaatatttgggatctcttcacattgcccaagcatttactaacacattagtctttattggta |
55958606 |
T |
|
| Q |
342 |
tttcatatccacctatg |
358 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
55958607 |
tttcatatccacctatg |
55958623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 116 - 358
Target Start/End: Original strand, 41795588 - 41795833
Alignment:
| Q |
116 |
gcagccagaggaagctcaatatttgctaaaccaaacaaaactcctggacacattcttcttcctcctccaaaaggaatgtactgaaagctattatca---t |
212 |
Q |
| |
|
||||| |||||||||||||| || ||||| |||| | ||| ||| |||||||||||||||||| | | | |||| ||||| | |||| |||||| | | |
|
|
| T |
41795588 |
gcagctagaggaagctcaatgttagctaagccaagcgaaattcccggacacattcttcttccttccctagaagggatgtattcaaagttattattactat |
41795687 |
T |
|
| Q |
213 |
tcactttattaaaatcaaaaccagtattatcatgaaacctctcaggtataaacttctctgcatcagaccaatgatttggatctctaccaattgcccatgc |
312 |
Q |
| |
|
||||||||||||| |||||| | || | || |||||||||| | ||||||| || ||||||||| | |||| || |||||||| || ||||||||||| |
|
|
| T |
41795688 |
tcactttattaaattcaaaatctttactgtcctgaaacctcttatgtataaaattatctgcatcatatcaatatttgggatctcttccgattgcccatgc |
41795787 |
T |
|
| Q |
313 |
atttaatattaaattagtctttataggtatttcatatccacctatg |
358 |
Q |
| |
|
||||| ||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
41795788 |
atttactatcacactagtctttataggtatttcatatccacctatg |
41795833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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