View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_2 (Length: 659)
Name: NF0792_low_2
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_2 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 30 - 576
Target Start/End: Complemental strand, 25003374 - 25002832
Alignment:
| Q |
30 |
agaaacaatttgaaaagcttggcaattgatagcctaagttggaaaatgagaaccatacacttaatgcacttggtttcaacaaacctaatcaaagtaacga |
129 |
Q |
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| T |
25003374 |
agaaacaatttgaaaagcttggcaattgatagcctaagtaggaaaatgagaaccatacacttaatgcacttggtttcaacaaacctaatcaaagtaacga |
25003275 |
T |
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| Q |
130 |
agcacaacataatctcagagttgagagaaaaattggagttcctcacaagagagttacgagaaaattagtgttttgagaaagnnnnnnnnn-tataatgaa |
228 |
Q |
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| T |
25003274 |
agaacaacataatctcagagttgagagaaaaattggagttcctcacaagagagttacgagaaaaatagtgttttgagaaagaaaaaaaaaatataatgaa |
25003175 |
T |
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| Q |
229 |
ataatttgtaagaattgtatctacaaat-aagatacatagttaggtctacttaaaggtaaaaatttgtatctccggtcattattacagtggagttcaaca |
327 |
Q |
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| T |
25003174 |
gtaatttgtaagaattgtatctacaaattaagatacatagtttgatcta-----aggtaaaaatttgtatctccagtcattattacagtggagttcaaga |
25003080 |
T |
|
| Q |
328 |
gggtccacaaatcccgtggtttttccttattaacattgagaaaattgagaaggtttttcatgctactaaaattttcttgtgtgatattttacgttcttgt |
427 |
Q |
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| T |
25003079 |
gggtccacaaatcccgtggtttttccttattcacattgagaagattgagaaggttttccatgctactaaaattttcttgtgtgatattttacgttcttgt |
25002980 |
T |
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| Q |
428 |
gtgatattttacgttttccgcttagttcctatttttgagttcacggagagggaaattatgcagcatttcccaacagaaaatgttatctcgtttacattta |
527 |
Q |
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| T |
25002979 |
gtgatattttacgttttccgcttagttcctatttttgagttcacggagagggaaattatgcagcatttcccaacagaaaatgttatctcgtttacattta |
25002880 |
T |
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| Q |
528 |
atatatgtacctgtgagtgaaaagcaatctaatgcttacaattcacata |
576 |
Q |
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| T |
25002879 |
atatatgtacctgcgagtgaaaag-aatgtaatgcttacaattcacata |
25002832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 574 - 648
Target Start/End: Complemental strand, 25002797 - 25002723
Alignment:
| Q |
574 |
ataagagagcgaataataaatccatccattaataaacacatataaattcttttattagtgattctcatatttcat |
648 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25002797 |
ataagagagcgaataataaatccatccatttataaacacatataaattcttttattagtgattctcatatttcat |
25002723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 1104828 - 1104789
Alignment:
| Q |
69 |
tggaaaatgagaaccatacacttaatgcacttggtttcaa |
108 |
Q |
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| T |
1104828 |
tggaaaatgagaaccatacatttaatgcacttggtttcaa |
1104789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 502
Target Start/End: Original strand, 2892 - 2936
Alignment:
| Q |
460 |
ttttgagttcacggag-agggaaattatgca-gcatttcccaaca |
502 |
Q |
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| T |
2892 |
ttttgagttcacggagaagggaaattatgcatgcatttcccaaca |
2936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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