View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_20 (Length: 352)
Name: NF0792_low_20
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 45653009 - 45652697
Alignment:
| Q |
15 |
tattggataaatgttctggtaaaaataagcgaaccggaacacactttgtatgag--ttttctggtagaaaattatgaatagaataacttagaagatgttt |
112 |
Q |
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| T |
45653009 |
tattggataaatgttctggtaaaaataagcgaaccggaacacactttgtatgagagttttctggtagaaaattatgaatagaataacttagaagatgttt |
45652910 |
T |
|
| Q |
113 |
ccaaaattctttgtgtaccggagaagatatgaccacaaatctgggttgtaaaaatagaacttactctctcttcttatctcgtgtctactagaacnnnnnn |
212 |
Q |
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|||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45652909 |
ccaaaattctttgtgtaccggaaaagatagaaccaaaaatctgggttgtaaaaatagaacttactttctcttcttatctcgtgtctactagaac-ttgtt |
45652811 |
T |
|
| Q |
213 |
nnnnaaaatgtgttagnnnnnnnnnnnnnttgagcattttaatttgtatatatgaggggaaaatggacagtttagtcaaaatatatggggtgagg--gta |
310 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
45652810 |
tttgaaaatgtgttagaaaaagtaaaaaattgagcattttaatttgtatatatgagggcaaaatggacagtttagtcaaaatatatggggtgagggtgta |
45652711 |
T |
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| Q |
311 |
taattgtaggtggt |
324 |
Q |
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|||||||||||||| |
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| T |
45652710 |
taattgtaggtggt |
45652697 |
T |
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