View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_23 (Length: 321)
Name: NF0792_low_23
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 1543198 - 1542988
Alignment:
| Q |
30 |
ttgggtagttctgaaaatttgaaaaacaggaaattaaaaccctttatggtatatagtatataaaagacaaagtttaatgagaattttggaaccatgtata |
129 |
Q |
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| T |
1543198 |
ttgggcagttctgaaaatttgaaaaacaggaaattaaaaccctttatggtatatagtatataaaagacaaagtttaatgagaattttggaaccatgtata |
1543099 |
T |
|
| Q |
130 |
tgtatatacctttgagtttgtaggaaagctcttcagaacaaacagctccaaaagcaaagtagtgtctagttgaaacagaatatatattcttcctagctag |
229 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1543098 |
tgtatataccattgagtttgtaggaaagctcttcagaacaaacagctccaaaagcaaagtagtgtctagttgaaacagaatatatattcttcctagctag |
1542999 |
T |
|
| Q |
230 |
ttcttcactgt |
240 |
Q |
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||||||||||| |
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| T |
1542998 |
ttcttcactgt |
1542988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 32420535 - 32420427
Alignment:
| Q |
132 |
tatatacctttgagtttgtaggaaagctcttcagaacaaacagctccaaaagcaaagtagtgtctagttgaaacagaatatatattcttcctagctagtt |
231 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
32420535 |
tatatacctttcagtttgtaggaaagctcttcagaacaaagagctccaaaagcaaagtagtgtctagttgaaacagaatatatgctcttcctagcctctt |
32420436 |
T |
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| Q |
232 |
cttcactgt |
240 |
Q |
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||||||||| |
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| T |
32420435 |
cttcactgt |
32420427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 32425321 - 32425136
Alignment:
| Q |
30 |
ttgggtagttctgaaaatttgaaaaacaggaaattaaaaccctttatggtatatagta-tataaaag----acaaagtttaatgagaa--ttttggaacc |
122 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| ||||| || | |||||||| | |
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| T |
32425321 |
ttgggaagttctgcaaatttgaaaaacaggaaattaaaaccctttatggtataatatactacaaaaggcaaacaaaatttaaagaaatatttttggaatc |
32425222 |
T |
|
| Q |
123 |
atgtatatgtatatacctttgagtttgtaggaaagctcttcagaacaaacagctccaaaagcaaagtagtgtctagttgaaacagaatatat |
214 |
Q |
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|||||||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425221 |
atgtatat------acctttgagtttgtcgcgaagctcttcagaacaaagagctccaaaagcaaagtagtgtctagttgaaacagaatatat |
32425136 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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