View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0792_low_28 (Length: 294)

Name: NF0792_low_28
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0792_low_28
NF0792_low_28
[»] scaffold0284 (1 HSPs)
scaffold0284 (25-294)||(486-755)
[»] chr2 (1 HSPs)
chr2 (25-294)||(31965501-31965769)
[»] chr8 (8 HSPs)
chr8 (25-294)||(41526688-41526958)
chr8 (29-147)||(361315-361434)
chr8 (28-147)||(23684346-23684466)
chr8 (28-147)||(45245580-45245700)
chr8 (205-286)||(45245442-45245523)
chr8 (205-290)||(40886982-40887063)
chr8 (224-290)||(361172-361237)
chr8 (83-147)||(19261646-19261710)
[»] chr5 (6 HSPs)
chr5 (25-294)||(9025112-9025381)
chr5 (29-147)||(23570285-23570404)
chr5 (28-147)||(27593334-27593454)
chr5 (237-290)||(30326906-30326959)
chr5 (75-147)||(30326746-30326818)
chr5 (224-290)||(23570481-23570546)
[»] scaffold0114 (1 HSPs)
scaffold0114 (25-294)||(37200-37468)
[»] chr4 (2 HSPs)
chr4 (25-294)||(314483-314752)
chr4 (55-294)||(6554701-6554940)
[»] chr1 (6 HSPs)
chr1 (25-294)||(49881963-49882231)
chr1 (29-147)||(21467389-21467508)
chr1 (29-147)||(19102420-19102539)
chr1 (28-147)||(15530440-15530560)
chr1 (224-290)||(19102616-19102681)
chr1 (71-147)||(22539604-22539680)
[»] scaffold0211 (1 HSPs)
scaffold0211 (49-294)||(18132-18379)
[»] chr3 (10 HSPs)
chr3 (25-292)||(52753771-52754031)
chr3 (113-294)||(50241640-50241821)
chr3 (28-286)||(40057900-40058159)
chr3 (54-147)||(2251242-2251335)
chr3 (28-147)||(14233098-14233217)
chr3 (25-74)||(50241820-50241869)
chr3 (28-147)||(39184427-39184547)
chr3 (224-290)||(2251100-2251165)
chr3 (205-286)||(39184289-39184370)
chr3 (224-286)||(20790441-20790502)
[»] chr6 (4 HSPs)
chr6 (29-147)||(21986537-21986654)
chr6 (224-290)||(33348056-33348121)
chr6 (237-290)||(21986395-21986448)
chr6 (81-147)||(29213987-29214053)
[»] scaffold0021 (1 HSPs)
scaffold0021 (71-147)||(128758-128834)
[»] scaffold0036 (1 HSPs)
scaffold0036 (25-147)||(49873-49996)
[»] scaffold0051 (1 HSPs)
scaffold0051 (230-291)||(12731-12792)
[»] scaffold0380 (1 HSPs)
scaffold0380 (79-147)||(14811-14879)


Alignment Details
Target: scaffold0284 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 294
Target Start/End: Original strand, 486 - 755
Alignment:
Q  25 catcaatttaaattttttaataagtatgtttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaagga 124  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  486 catcaatttaaattttttaataagtatgtttttgtcaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaagga 585  T
Q  125 atttgaaataagggaggttgaatnnnnnnnntagcatggaagggaatggcgttcagtaatcaaaatttaggataaattttttaaataaatgggatataaa 224  Q
    |||||||||||||||||||||||        || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  586 atttgaaataagggaggttgaataaaaaaaataacatggaagcgaatggcgttcagtaatcaaaatttaggataaattttttaaataaatgagatataaa 685  T
Q  225 agctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcaccatatt 294  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  686 agctaacaaaacaattcatcataactttggaacttccaagggatcttacattgagttttatcaccatatt 755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 294
Target Start/End: Original strand, 31965501 - 31965769
Alignment:
Q  25 catcaatttaaattttttaataagtatgtttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaagga 124  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| || |||||||||||||||||||||||||||||||||    
T  31965501 catcaatttaaattttttaataagtatgtttttgtcaactcagtagaaca--tatgcatttttccactgttagattctacaaaagacccaaagtgaagga 31965598  T
Q  125 atttgaaataagggaggttgaatnnnnnnnn-tagcatggaagggaatggcgttcagtaatcaaaatttaggataaattttttaaataaatgggatataa 223  Q
    |||||||||||||||||||||||         ||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| |||||||    
T  31965599 atttgaaataagggaggttgaataaaaaaaaatagcatggaagcgaatggcgttcaataattaaaatttaggataaattttttaaataaatgagatataa 31965698  T
Q  224 aagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcaccatatt 294  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  31965699 aagctaacaaaacaattcatcataactttgggacttccaagggatcttacactgagttttatcaccatatt 31965769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 25 - 294
Target Start/End: Original strand, 41526688 - 41526958
Alignment:
Q  25 catcaatttaaattttttaataagtatgtttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaagga 124  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41526688 catcaatttaaattttttaataagtatatttttgtcaactcagtagaacacatatgcatttttccattgttagattctacaaaagacccaaagtgaagga 41526787  T
Q  125 atttgaaataagggaggttgaatnnnnnnnntagcatggaagggaatggcgttcagtaatcaaaatttaggata-aattttttaaataaatgggatataa 223  Q
    |||||||||||||||||||||||        ||||||||||| ||||| | |||| ||||||||||||||||||   ||||||||||||||| |||||||    
T  41526788 atttgaaataagggaggttgaataaaaaaaatagcatggaagcgaatgacattcaataatcaaaatttaggatatttttttttaaataaatgagatataa 41526887  T
Q  224 aagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcaccatatt 294  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |  ||||||||||||||||    
T  41526888 aagctaacaaaacaattcatcataactttgggacttccaagggatcttacactaggttttatcaccatatt 41526958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 361434 - 361315
Alignment:
Q  29 aatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatt 127  Q
    |||||||| |||| |||||| |||| |||||| |||| || | |||||||||||||||||||||||| |  |||||| ||||||| ||||||||||||||    
T  361434 aatttaaaattttaaataagcatgtattttgtcaacttagcaaaacacatatgcattttttcattgtgaagttctaccaaagaccaaaagtgaaggaatt 361335  T
Q  128 tgaaataagggaggttgaat 147  Q
    ||||||||| ||||||||||    
T  361334 tgaaataagtgaggttgaat 361315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 23684466 - 23684346
Alignment:
Q  28 caatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaat 126  Q
    ||||||||| |||| |||||| |||| |||||| |||| || | |||| |||||||||||| |||||| |  |||||| ||||| | |||||||||||||    
T  23684466 caatttaaaattttaaataagcatgtattttgtcaacttagcaaaacatatatgcatttttccattgtgaagttctaccaaagatcaaaagtgaaggaat 23684367  T
Q  127 ttgaaataagggaggttgaat 147  Q
    |||||||||| ||||||||||    
T  23684366 ttgaaataagtgaggttgaat 23684346  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 45245700 - 45245580
Alignment:
Q  28 caatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaat 126  Q
    ||||||||| |||| |||||| |||| |||||| |||| |  | ||||||| ||||||||| || ||| |  |||||| ||||||| ||||| |||||||    
T  45245700 caatttaaaattttaaataagcatgtattttgtcaacttaacaaaacacatgtgcatttttccactgtaaagttctaccaaagaccaaaagtaaaggaat 45245601  T
Q  127 ttgaaataagggaggttgaat 147  Q
    || ||||||||||||||||||    
T  45245600 ttaaaataagggaggttgaat 45245580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 45245523 - 45245442
Alignment:
Q  205 ttaaataaatgggatataaaagctaacaaaacaattcatcataaattt-gggacttccaagggatcttacattgagttttatc 286  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||| | |||||| ||| ||||| ||||||    
T  45245523 ttaaataaatgagatctaaaagctaacaaaacaattcatc-taaatttcgggacttctaggggatcctaccttgagctttatc 45245442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 40887063 - 40886982
Alignment:
Q  205 ttaaataaatgggatataaaagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcacca 290  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||| ||  |||||||    ||||| ||| ||||||||||||||||    
T  40887063 ttaaataaatgagatctaaaagctaacaaaacaattcatcttaatttcaggacttc----ggatcctaccttgagttttatcacca 40886982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 361237 - 361172
Alignment:
Q  224 aagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcacca 290  Q
    |||||||||||  |||||||||||| |||||||||| ||||||||| ||  ||||||||||||||||    
T  361237 aagctaacaaat-aattcatcataactttgggactttcaagggatcctatcttgagttttatcacca 361172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 19261646 - 19261710
Alignment:
Q  83 ttttttcattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaat 147  Q
    |||||||||||| | || | || ||||||| ||| ||||||||||| |||||| |||||||||||    
T  19261646 ttttttcattgtcacatgccactaaagaccaaaattgaaggaatttaaaataatggaggttgaat 19261710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 25 - 294
Target Start/End: Complemental strand, 9025381 - 9025112
Alignment:
Q  25 catcaatttaaattttttaataagtatgtttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaagga 124  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||    
T  9025381 catcgatttaaattttttaataagtatgtttttgtcaactcagtagaacacatatgcatttttccattgttagattctacaaa-gatccaaagtgaagga 9025283  T
Q  125 atttgaaataagggaggttgaatnnnnnnnn-tagcatggaagggaatggcgttcagtaatcaaaatttaggataaattttttaaataaatgggatataa 223  Q
    |||||||||||||||||||||||         ||||||||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  9025282 atttgaaataagggaggttgaataaaaaaaaatagcatggaagcgaatgacgttcaataatcaaaatttaggataatttttttaaataaatgagatataa 9025183  T
Q  224 aagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcaccatatt 294  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  9025182 aagctaacaaaacaatccatcataactttgggacttccaagggatcttacactgagttttatcaccatatt 9025112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 23570285 - 23570404
Alignment:
Q  29 aatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatt 127  Q
    |||||||| |||| |||||| |||| |||||| |||| || | ||||||||||||||||| |||||| || |||||| ||||||| ||| ||||||||||    
T  23570285 aatttaaaattttaaataagcatgtattttgtcaacttagcaaaacacatatgcatttttccattgtgaggttctaccaaagaccaaaattgaaggaatt 23570384  T
Q  128 tgaaataagggaggttgaat 147  Q
    ||||||||| ||||||||||    
T  23570385 tgaaataagtgaggttgaat 23570404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 27593334 - 27593454
Alignment:
Q  28 caatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaat 126  Q
    ||||||||| |||  |||||| |||| |||||| |||| || | ||||||||||||||||| || | | |  |||||| ||||||| ||||| |||||||    
T  27593334 caatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacatatgcatttttccactatgaagttctaccaaagaccaaaagtaaaggaat 27593433  T
Q  127 ttgaaataagggaggttgaat 147  Q
    |||||||||||||||||||||    
T  27593434 ttgaaataagggaggttgaat 27593454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 30326906 - 30326959
Alignment:
Q  237 aattcatcataaatttgggacttccaagggatcttacattgagttttatcacca 290  Q
    |||||||||||| |||||||||||||||||||| ||  ||||||||||||||||    
T  30326906 aattcatcataactttgggacttccaagggatcctatcttgagttttatcacca 30326959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 30326746 - 30326818
Alignment:
Q  75 catatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaat 147  Q
    ||||||||||||| |||||| |  |||||| ||||||  ||| ||||||||||||||||||| ||||||||||    
T  30326746 catatgcatttttccattgtgaagttctaccaaagacaaaaaatgaaggaatttgaaataagtgaggttgaat 30326818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 23570481 - 23570546
Alignment:
Q  224 aagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcacca 290  Q
    |||||||||||  ||| |||||||| |||||||||||||||||||| ||  ||||||||||||||||    
T  23570481 aagctaacaaat-aatacatcataactttgggacttccaagggatcctatcttgagttttatcacca 23570546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 25 - 294
Target Start/End: Complemental strand, 37468 - 37200
Alignment:
Q  25 catcaatttaaattttttaataagtatgtttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaagga 124  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  37468 catcaatttaaattttctaataagtatgtttttgtcaactcagtagaacacatatgcatttttccattgttagattatacaaaagacccaaagtgaagga 37369  T
Q  125 atttgaaataagggaggttgaatnnnnnnnntagcatggaagggaatggcgttcagtaatcaaaatttaggataaattttttaaataaatgggatataaa 224  Q
    |||||||||||||||| ||||||        |||||| |||| ||||||| |||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  37368 atttgaaataagggagattgaat-aaaaaactagcatcgaagcgaatggctttcaataatcaaaatttaggataatttttttaaataaatgagatataaa 37270  T
Q  225 agctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcaccatatt 294  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||||||    
T  37269 agctaacaaaacaattaatcatacctttgggacttccaagggatcttacactgagttttatcaccatatt 37200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 25 - 294
Target Start/End: Complemental strand, 314752 - 314483
Alignment:
Q  25 catcaatttaaattttttaataagtatgtttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaagga 124  Q
    ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  314752 catcaatttaaattttttaataagtatgtttttgtcaattcagtggaacacatatgcatttttccattgttagattctacaaaagacctaaagtgaagga 314653  T
Q  125 atttgaaataagggaggttgaatnnnnnnnntagcatggaagggaatggcgttcagtaatcaaaatttaggataaattttttaaat-aaatgggatataa 223  Q
     ||||||||||||||||||||||        ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||| |||||||    
T  314652 ttttgaaataagggaggttgaat-aaaaaaatagcatggaagcgaatgacgttcaataatcaaaatttaggataaattttttaaataaaatgagatataa 314554  T
Q  224 aagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcaccatatt 294  Q
    ||||||| |||||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||||||    
T  314553 aagctaataaaacaattcttcataactttgggacttccaatggatcttacactgagttttatcaccatatt 314483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 55 - 294
Target Start/End: Complemental strand, 6554940 - 6554701
Alignment:
Q  55 tttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaatnnnnnnn 154  Q
    ||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||           
T  6554940 tttgtcaactcattagaacacatatgcatttttccattgttagattctaccaaagacccaaagtgaaggaatttgaaataagggatgttgaataaaaaaa 6554841  T
Q  155 ntagcatggaagggaatggcgttcagtaatcaaaatttaggataaattttttaaataaatgggatataaaagctaacaaaacaattcatcataaatttgg 254  Q
     ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  6554840 atagcatggaagcgaatgacgttcaataatcaaaatttaggataaattttttaaataaatgagatataaaagctaacaaaacaattcatcataactttgg 6554741  T
Q  255 gacttccaagggatcttacattgagttttatcaccatatt 294  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  6554740 gacttccaagggatcttacactgagttttatcaccatatt 6554701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 25 - 294
Target Start/End: Complemental strand, 49882231 - 49881963
Alignment:
Q  25 catcaatttaaattttttaataagtatgtttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaagga 124  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||    
T  49882231 catcaatttaaattttttaataagtatgtttttgtcaactcagtagaacacatatgcatttttcctttgttagattctacaaaagatccaaagtgaagga 49882132  T
Q  125 atttgaaataagggaggttgaatnnnnnnnntagcatggaagggaatggcgttcagtaatcaaaatttaggataaattttttaaataaatgggatataaa 224  Q
    |||||||||||| ||||||||||         |||||||||| |||||||||||| ||||||||||||||||||||   |||||||||||| ||||||||    
T  49882131 atttgaaataagagaggttgaataaaaaaac-agcatggaagcgaatggcgttcaataatcaaaatttaggataaaaaatttaaataaatgagatataaa 49882033  T
Q  225 agctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcaccatatt 294  Q
    ||| ||||||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  49882032 agcgaacaaaataattcattataactttgggacttccaagggatcttacactgagttttatcaccatatt 49881963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 21467389 - 21467508
Alignment:
Q  29 aatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatt 127  Q
    |||||||| |||| |||||| |||| |||||| |||| || | ||||||||||||||||| |||||| |  |||||| ||||||| ||||||||||||||    
T  21467389 aatttaaaattttaaataagcatgtattttgtcaacttagcaaaacacatatgcatttttccattgtgaagttctaccaaagaccaaaagtgaaggaatt 21467488  T
Q  128 tgaaataagggaggttgaat 147  Q
    ||||||||| ||||||||||    
T  21467489 tgaaataagtgaggttgaat 21467508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 19102420 - 19102539
Alignment:
Q  29 aatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatt 127  Q
    |||||||| |||| |||||| |||| |||||| |||| || | ||||||||||||||||| |||||| |  |||||| ||||||| ||||||||||||||    
T  19102420 aatttaaaattttaaataagcatgtattttgtcaacttagcaaaacacatatgcatttttacattgtgaagttctaccaaagaccaaaagtgaaggaatt 19102519  T
Q  128 tgaaataagggaggttgaat 147  Q
    ||||| ||| ||||||||||    
T  19102520 tgaaacaagtgaggttgaat 19102539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 15530560 - 15530440
Alignment:
Q  28 caatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaat 126  Q
    ||||||||| |||| |||||| |||| |||||| |||| ||   |||| ||||||||||||||||||| |  |||||| ||||| | ||||||||||||     
T  15530560 caatttaaaattttaaataagcatgtattttgtcaacttagcgaaacatatatgcattttttcattgtgaagttctaccaaagatcaaaagtgaaggaag 15530461  T
Q  127 ttgaaataagggaggttgaat 147  Q
    |||||||||| ||||||||||    
T  15530460 ttgaaataagcgaggttgaat 15530440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 19102616 - 19102681
Alignment:
Q  224 aagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcacca 290  Q
    |||||||||||  |||||||||||| |||||||||||||||||||| ||  ||||| ||||||||||    
T  19102616 aagctaacaaat-aattcatcataactttgggacttccaagggatcctatcttgagctttatcacca 19102681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 22539680 - 22539604
Alignment:
Q  71 aacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaat 147  Q
    |||| |||||||||||| |||||| |  |||||  ||||| | ||| ||||||||||| ||||||| ||||||||||    
T  22539680 aacatatatgcatttttccattgtgaagttctaacaaagatcaaaaatgaaggaatttcaaataagtgaggttgaat 22539604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 49 - 294
Target Start/End: Original strand, 18132 - 18379
Alignment:
Q  49 tatgtttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaatn 148  Q
    ||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18132 tatgtttttgtcaactgagtagaacacatatgcatttttccattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaata 18231  T
Q  149 nnnnnnn--tagcatggaagggaatggcgttcagtaatcaaaatttaggataaattttttaaataaatgggatataaaagctaacaaaacaattcatcat 246  Q
             |||||||||||  |||| |||||| |||||||||||| |||||| ||||||||||||||| |||||||||| |||||||||||||||||||    
T  18232 aaaaaaaaatagcatggaagctaatgacgttcaataatcaaaatttgggataatttttttaaataaatgagatataaaagttaacaaaacaattcatcat 18331  T
Q  247 aaatttgggacttccaagggatcttacattgagttttatcaccatatt 294  Q
    || ||||||||||||||||||||||||| ||| |||||||||||||||    
T  18332 aactttgggacttccaagggatcttacactgaattttatcaccatatt 18379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 25 - 292
Target Start/End: Complemental strand, 52754031 - 52753771
Alignment:
Q  25 catcaatttaaattttttaataagtatgtttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaagga 124  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  52754031 catcaatttaaatttttcaataagtaggtttttgtcaactcagtagaacacatatgcatttttccattgttagattctacaaaagaccaaaagtgaagga 52753932  T
Q  125 atttgaaataagggaggttgaatnnnnnnnntagcatggaagggaatggcgttcagtaatcaaaatttaggataaattttttaaataaatgggatataaa 224  Q
    ||||       ||||||||||||        ||||||||||| ||||||  |||| |||| |||||||||||||||   |||||||||||| ||||||||    
T  52753931 attt-------gggaggttgaataaaaaaaatagcatggaagcgaatggtattcaataattaaaatttaggataaaaaatttaaataaatgagatataaa 52753839  T
Q  225 agctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcaccata 292  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||| | |||||||||||||||||    
T  52753838 agctaacaaaacaattcatcataactttgggacgtccaatggatcttatactgagttttatcaccata 52753771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 113 - 294
Target Start/End: Complemental strand, 50241821 - 50241640
Alignment:
Q  113 caaagtgaaggaatttgaaataagggaggttgaatnnnnnnnntagcatggaagggaatggcgttcagtaatcaaaatttaggataaattttttaaataa 212  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  50241821 caaagtgaaggaatttgaaataagggaggttgaataaaaaaaatagcatggaagcaaatggcgttcaataatcaaaatttaggataaattttttaaataa 50241722  T
Q  213 atgggatataaaagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcaccatatt 294  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  50241721 atgagatataaaagctaacaaaacaattcatcataactttgggacttccaagggatcttacagtgagttttatcaccatatt 50241640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 286
Target Start/End: Complemental strand, 40058159 - 40057900
Alignment:
Q  28 caatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaat 126  Q
    ||||||||| |||  |||||| |||| |||||| |||| || | ||||||||||||||||| || ||| |  |||||| ||||||| ||||| || ||||    
T  40058159 caatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacatatgcatttttccactgtgaagttctaccaaagaccaaaagtaaaagaat 40058060  T
Q  127 ttgaaataagggaggttgaatnnnnnnnntagcatggaagggaatggcgttcagtaatcaaaatttaggataaattttttaaataaatgggatataaaag 226  Q
    |||||||||||||||||||||        ||||||| |   |||||   | || |||  |||||| |  ||| |    ||||||||||| ||| ||||||    
T  40058059 ttgaaataagggaggttgaataaaaaaaatagcatgaagacgaatgatttccaataactaaaattaaaaatacaaaaattaaataaatgagatctaaaag 40057960  T
Q  227 ctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatc 286  Q
     ||||||||||||||||| ||| ||||||||||| |||||||| ||| ||||| ||||||    
T  40057959 ataacaaaacaattcatcttaattttgggacttctaagggatcctaccttgagctttatc 40057900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 2251335 - 2251242
Alignment:
Q  54 ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaat 147  Q
    |||||| |||| || | ||||||||||||||||| |||||| |  |||||| ||||||| ||||||||||||||||||||||  ||||||||||    
T  2251335 ttttgtcaacttagcaaaacacatatgcatttttccattgtgaagttctaccaaagaccaaaagtgaaggaatttgaaataattgaggttgaat 2251242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 14233217 - 14233098
Alignment:
Q  28 caatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaat 126  Q
    |||||||||||||  |||||| |||| |||||| |||| || | |||||||||| |||||| ||| || |  |||||| ||||||| |||||||||||||    
T  14233217 caatttaaatttta-aataagcatgtattttgtcaacttagcaaaacacatatgtatttttccatcgtgaagttctaccaaagaccaaaagtgaaggaat 14233119  T
Q  127 ttgaaataagggaggttgaat 147  Q
    |||||||||| ||||||||||    
T  14233118 ttgaaataagcgaggttgaat 14233098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 50241869 - 50241820
Alignment:
Q  25 catcaatttaaattttttaataagtatgtttttgttaactcagtagaaca 74  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  50241869 catcaatttaaatattttaataagtatgtttttgtcaactcagtagaaca 50241820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 39184547 - 39184427
Alignment:
Q  28 caatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaat 126  Q
    ||||||||| |||  |||||| |||| |||||| |||| || | |||||| |||||||||| || ||| |  |||||| ||||||| ||||| || ||||    
T  39184547 caatttaaaatttcaaataagcatgtattttgtcaacttagcaaaacacaaatgcatttttccagtgtgaagttctaccaaagaccaaaagtaaaagaat 39184448  T
Q  127 ttgaaataagggaggttgaat 147  Q
    |||||||||||||||||||||    
T  39184447 ttgaaataagggaggttgaat 39184427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 2251165 - 2251100
Alignment:
Q  224 aagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcacca 290  Q
    |||||||||||  |||||||||||| |||||||||||||||||||| ||  ||||||||||||||||    
T  2251165 aagctaacaaat-aattcatcataactttgggacttccaagggatcctatcttgagttttatcacca 2251100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 39184370 - 39184289
Alignment:
Q  205 ttaaataaatgggatataaaagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatc 286  Q
    ||||||||||| |||  ||||||||||||||||||||||| ||| || | |||||| |||||||| ||| ||||| ||||||    
T  39184370 ttaaataaatgagatcgaaaagctaacaaaacaattcatcttaatttcgagacttctaagggatcctaccttgagctttatc 39184289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 20790502 - 20790441
Alignment:
Q  224 aagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatc 286  Q
    |||||||||||  |||||||||||| |||||||||||||||||||| ||  ||||||||||||    
T  20790502 aagctaacaaat-aattcatcataactttgggacttccaagggatcctatcttgagttttatc 20790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 21986654 - 21986537
Alignment:
Q  29 aatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatt 127  Q
    |||||||| |||| ||||||||||| |||||| |||| |||| ||||||| |  |||||| |||||| |  |||||| ||||||| ||||||||||||||    
T  21986654 aatttaaaattttaaataagtatgtattttgtcaacttagtaaaacacatgt--atttttccattgtgaagttctaccaaagaccaaaagtgaaggaatt 21986557  T
Q  128 tgaaataagggaggttgaat 147  Q
    |||||||||  |||||||||    
T  21986556 tgaaataagttaggttgaat 21986537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 33348056 - 33348121
Alignment:
Q  224 aagctaacaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcacca 290  Q
    |||||||||||  |||||||||||| |||||||||||||||||||| ||  ||||||||||||||||    
T  33348056 aagctaacaaat-aattcatcataactttgggacttccaagggatcctatcttgagttttatcacca 33348121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 21986448 - 21986395
Alignment:
Q  237 aattcatcataaatttgggacttccaagggatcttacattgagttttatcacca 290  Q
    |||||||||||| |||||||||| ||||||||| ||  ||||||||||||||||    
T  21986448 aattcatcataactttgggactttcaagggatcctatcttgagttttatcacca 21986395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 29213987 - 29214053
Alignment:
Q  81 cattttttcattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaat 147  Q
    |||||||||||||| || | | || ||||||| ||||||||| ||||||||||||  ||||||||||    
T  29213987 cattttttcattgtcaggtcccaccaaagaccaaaagtgaagaaatttgaaataattgaggttgaat 29214053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 128758 - 128834
Alignment:
Q  71 aacacatatgcattttttcattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaat 147  Q
    ||||||| | |||||||||||||| |||||| |||||| | | |||||||||||||||||||| |  ||||||||||    
T  128758 aacacatctacattttttcattgtaagattccacaaaatatcaaaagtgaaggaatttgaaatgatagaggttgaat 128834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 49873 - 49996
Alignment:
Q  25 catcaatttaaattttttaataagtatgt-ttttgttaactcagtagaacacatatgcattttttcattgttagattctacaaaagacccaaagtgaagg 123  Q
    |||||||||||| |  |||||||| |||| |||||  |||  || ||||||||| | |||||||||||||| | ||   |||||||||| ||||||||||    
T  49873 catcaatttaaaataattaataagcatgtattttgcaaacgtagcagaacacatctacattttttcattgtcaaatcggacaaaagaccaaaagtgaagg 49972  T
Q  124 aatttgaaataagggaggttgaat 147  Q
    ||||| ||||||  ||||||||||    
T  49973 aatttaaaataattgaggttgaat 49996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 12792 - 12731
Alignment:
Q  230 acaaaacaattcatcataaatttgggacttccaagggatcttacattgagttttatcaccat 291  Q
    ||||||| ||||||||||  |||||||||||| | ||||| |||||||||||| ||||||||    
T  12792 acaaaacgattcatcatatgtttgggacttcctacggatcatacattgagtttaatcaccat 12731  T

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Target: scaffold0380 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 14879 - 14811
Alignment:
Q  79 tgcattttttcattgttagattctacaaaagacccaaagtgaaggaatttgaaataagggaggttgaat 147  Q
    |||||||||||||||| | ||   || ||||||| ||||||||||||||| ||||||  ||||||||||    
T  14879 tgcattttttcattgtcaaatcagaccaaagaccaaaagtgaaggaatttaaaataatagaggttgaat 14811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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