View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_35 (Length: 254)
Name: NF0792_low_35
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 7073387 - 7073619
Alignment:
| Q |
1 |
cagttgttcactagcagttgaacggaacgctacattctctagtgatacacaaccatcagcatctagtgtttctagtgatggaggaagctctggtagagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7073387 |
cagttgttcactagcagttgaacggaacgctacattctctagtgatacacaaccatcagcatctagtgtttctagtgatggaggaagctctggtagagtt |
7073486 |
T |
|
| Q |
101 |
tgaagttcactgcaatggtgcaagtccagatgtctcagccttgtaagattcttgatgctttttggcaagctttcaatgtgagtgtgtcctagatataact |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7073487 |
tgaagttcactgcaatggtgcaagtccagatgtctcagccttgtaagattcttgatgctttttggcaagctttcaatgtgagtgtgtcctagatataact |
7073586 |
T |
|
| Q |
201 |
tttcaagtttggtttgaagtccaattgatgatg |
233 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |
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| T |
7073587 |
tttcaagtttggtttgtagtccaattgatgatg |
7073619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 7032946 - 7032717
Alignment:
| Q |
2 |
agttgttcactagcagttgaacggaacgctacattctctagtgatacacaaccatcagcatctagtgtttctagtgatggaggaagctctggtagagttt |
101 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| ||| ||||||||||||||||| |
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| T |
7032946 |
agttgttcactagccgttgaacggaacgctacattctctagtgatagacaaccacaagcatctagtatttctagtgattgagcaagctctggtagagttt |
7032847 |
T |
|
| Q |
102 |
gaagttcactgcaatggtgcaagtccagatgtctcagccttgtaagattcttgatgctttttggcaagctttcaatgtgagtgtgtcctagatataactt |
201 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |||||||||||| ||||||||||||| |
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| T |
7032846 |
gaagctcactgcaaaggtgcaagtccagatgtctcagccttgtaagattcctgatgcttttaggcaagctctgaatgtgagtgtgcgctagatataactt |
7032747 |
T |
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| Q |
202 |
ttcaagtttggtttgaagtccaattgatga |
231 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
7032746 |
ttcaagtttggtttgaagtccaattgatga |
7032717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 7025566 - 7025337
Alignment:
| Q |
2 |
agttgttcactagcagttgaacggaacgctacattctctagtgatacacaaccatcagcatctagtgtttctagtgatggaggaagctctggtagagttt |
101 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||| | || |||||||||||||||| |||| |
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| T |
7025566 |
agttgttcactagcagttgaacggaactctacattctctagtgacacacaaccaccagcatctagtgtttcaatcgacggaggaagctctggtaatgttt |
7025467 |
T |
|
| Q |
102 |
gaagttcactgcaatggtgcaagtccagatgtctcagccttgtaagattcttgatgctttttggcaagctttcaatgtgagtgtgtcctagatataactt |
201 |
Q |
| |
|
|||| | ||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| |||||| |
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| T |
7025466 |
gaagctttctgcaatggtgtaagtctagatgtctcagccttgtaaggttcttgatgcttttaggcaagctctcaatgtgagtgtgtcctagatgtaactt |
7025367 |
T |
|
| Q |
202 |
ttcaagtttggtttgaagtccaattgatga |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7025366 |
ttcaagtttggtttgaagtccaattgatga |
7025337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 7038640 - 7038411
Alignment:
| Q |
2 |
agttgttcactagcagttgaacggaacgctacattctctagtgatacacaaccatcagcatctagtgtttctagtgatggaggaagctctggtagagttt |
101 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| || || |||| ||||||| ||| |||||||||||||||| |||| |
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|
| T |
7038640 |
agttgttcactggcagttgaacggaactctacattctgtagtgatacacaaccaacaacagctagcatttctagcgattgaggaagctctggtagggttt |
7038541 |
T |
|
| Q |
102 |
gaagttcactgcaatggtgcaagtccagatgtctcagccttgtaagattcttgatgctttttggcaagctttcaatgtgagtgtgtcctagatataactt |
201 |
Q |
| |
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||| || ||||||| || | || ||||||||||||||||||||||||||||| || |||||||| |||||||||||| |||| |||| ||| |
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| T |
7038540 |
taagctccctgcaataaaagaaacctagttgtctcagccttgtaagattcttgatgctcttaggcaagctctcaatgtgagtgcgtccaagatttaaaaa |
7038441 |
T |
|
| Q |
202 |
ttcaagtttggtttgaagtccaattgatga |
231 |
Q |
| |
|
| ||||||| ||||||||||||||||||| |
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|
| T |
7038440 |
tgtaagtttgctttgaagtccaattgatga |
7038411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 7067212 - 7067248
Alignment:
| Q |
197 |
aacttttcaagtttggtttgaagtccaattgatgatg |
233 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |
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|
| T |
7067212 |
aacttttcaagtttggtttgaagtcctattgatgatg |
7067248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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