View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_40 (Length: 251)
Name: NF0792_low_40
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 28490409 - 28490651
Alignment:
| Q |
1 |
tgatgcttatagctatccttttgattatgggacgaaaacatttagttgttcatccgaaagttatgacattatattttgtccattttccaaaaagaaaact |
100 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28490409 |
tgatgcttatagttatccttacgattatgggacgaaaacatttagttgttcatccgaaagttataacattatattttgtccattttccaaaaagaaaact |
28490508 |
T |
|
| Q |
101 |
ctttttgatactctatttcgtccttttgtaatattgatatcggtgagtgttgtaattggaattgtggttagatgctgttggtgtcccgcacaaaaacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
28490509 |
ctttttgatactctatttcgtccttttgtaatattgatatcggtgagtgttgtaattggaattgtggttagatgttgctggtgtcccgcacaaaaacaat |
28490608 |
T |
|
| Q |
201 |
atgttgacacaagtgtaattgtaaggcctgcccggcctatgct |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28490609 |
atgttgacacaagtgtaattgtaaggcctgcccggcctatgct |
28490651 |
T |
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