View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_47 (Length: 206)
Name: NF0792_low_47
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_47 |
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| [»] chr1 (3 HSPs) |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 6e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 47419478 - 47419335
Alignment:
| Q |
1 |
gaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatgttttttcttaaggtggttagagatag |
100 |
Q |
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| T |
47419478 |
gaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatgttttttcttaaggtggttagagatag |
47419379 |
T |
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| Q |
101 |
gtttcaacgttatgctaagaaccgtcctttttcttgtagacaaa |
144 |
Q |
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| T |
47419378 |
gtttcaacgttatgctaagaaccgtcctttttcttgtagacaaa |
47419335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 47391115 - 47390972
Alignment:
| Q |
1 |
gaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatgttttttcttaaggtggttagagatag |
100 |
Q |
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| T |
47391115 |
gaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggtaggcagaatagatgatttttcctaaggtggttagagatag |
47391016 |
T |
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| Q |
101 |
gtttcaacgttatgctaagaaccgtcctttttcttgtagacaaa |
144 |
Q |
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| T |
47391015 |
atttcaacgttatgctaagaaccatcctttttattgcagacaaa |
47390972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 47421950 - 47421796
Alignment:
| Q |
1 |
gaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatag--------------------atgtttttt |
80 |
Q |
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| T |
47421950 |
gaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatagtttactttatcttacaatgtgtttt |
47421851 |
T |
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| Q |
81 |
cttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttctt |
135 |
Q |
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| T |
47421850 |
cttaaggtggttaaagatagatttcaacgttatgctaagaaccatcctttttctt |
47421796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 47408249 - 47408183
Alignment:
| Q |
1 |
gaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtaga |
67 |
Q |
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| T |
47408249 |
gaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcagcaacaggtaggtaga |
47408183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 10173734 - 10173784
Alignment:
| Q |
156 |
tgccattagtagaagcccaatgtaatccgcttcaaattcacacctgtaaat |
206 |
Q |
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| T |
10173734 |
tgccattagtagaagcccaatgtaatccgcttcaaattcacacttgtaaat |
10173784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 2928017 - 2928073
Alignment:
| Q |
150 |
agctgttgccattagtagaagcccaatgtaatccgcttcaaattcacacctgtaaat |
206 |
Q |
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| T |
2928017 |
agctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaat |
2928073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 2311253 - 2311208
Alignment:
| Q |
150 |
agctgttgccattagtagaagcccaatgtaatccgcttcaaattca |
195 |
Q |
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| T |
2311253 |
agctgctgccattagttgaagcccgatgtaatcagcttcaaattca |
2311208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 1237949 - 1237999
Alignment:
| Q |
156 |
tgccattagtagaagcccaatgtaatccgcttcaaattcacacctgtaaat |
206 |
Q |
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| T |
1237949 |
tgccattagtagaagcccaatgtaatccgcttcaaattcaaacctgcaaat |
1237999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 29088875 - 29088920
Alignment:
| Q |
150 |
agctgttgccattagtagaagcccaatgtaatccgcttcaaattca |
195 |
Q |
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| T |
29088875 |
agctgatgccattagtagaagcccaatgtaatcaacttcaaattca |
29088920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 1175498 - 1175442
Alignment:
| Q |
150 |
agctgttgccattagtagaagcccaatgtaatccgcttcaaattcacacctgtaaat |
206 |
Q |
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| T |
1175498 |
agctgctgccatcagtagaagcccaatgtaatcagcttcatattcaaacctgcaaat |
1175442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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