View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0792_low_50 (Length: 204)

Name: NF0792_low_50
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0792_low_50
NF0792_low_50
[»] scaffold0284 (3 HSPs)
scaffold0284 (1-180)||(832-1011)
scaffold0284 (1-79)||(7590-7668)
scaffold0284 (1-78)||(6424-6501)
[»] chr3 (12 HSPs)
chr3 (1-165)||(50241399-50241563)
chr3 (3-180)||(14045293-14045470)
chr3 (3-165)||(2250895-2251056)
chr3 (2-165)||(39184079-39184242)
chr3 (3-180)||(20790217-20790393)
chr3 (2-165)||(40057690-40057853)
chr3 (1-79)||(20779566-20779644)
chr3 (1-76)||(32263116-32263191)
chr3 (1-79)||(10020118-10020196)
chr3 (1-83)||(12744020-12744102)
chr3 (1-79)||(14044292-14044370)
chr3 (1-135)||(40416243-40416376)
[»] scaffold0211 (1 HSPs)
scaffold0211 (1-180)||(18456-18635)
[»] scaffold0114 (2 HSPs)
scaffold0114 (2-165)||(36959-37122)
scaffold0114 (1-76)||(1376-1451)
[»] chr4 (9 HSPs)
chr4 (1-180)||(314227-314406)
chr4 (1-180)||(6554445-6554624)
chr4 (46-169)||(35695938-35696063)
chr4 (1-133)||(42727173-42727305)
chr4 (1-79)||(13918248-13918326)
chr4 (2-79)||(8057690-8057767)
chr4 (1-75)||(6560991-6561065)
chr4 (1-83)||(39977199-39977281)
chr4 (4-85)||(3774626-3774707)
[»] chr2 (8 HSPs)
chr2 (1-180)||(31965844-31966023)
chr2 (81-165)||(24968967-24969051)
chr2 (1-79)||(20106660-20106738)
chr2 (1-142)||(39403826-39403968)
chr2 (7-90)||(29652483-29652568)
chr2 (1-79)||(39835638-39835716)
chr2 (1-90)||(6910335-6910424)
chr2 (2-82)||(25546947-25547027)
[»] chr8 (11 HSPs)
chr8 (1-165)||(41527033-41527197)
chr8 (3-180)||(360952-361128)
chr8 (2-165)||(40886775-40886939)
chr8 (1-118)||(15342301-15342418)
chr8 (1-118)||(15431366-15431483)
chr8 (1-118)||(15522670-15522787)
chr8 (2-142)||(45245255-45245395)
chr8 (1-79)||(8358803-8358881)
chr8 (1-79)||(17888052-17888130)
chr8 (2-77)||(14376926-14377002)
chr8 (1-83)||(21586497-21586579)
[»] chr5 (7 HSPs)
chr5 (1-180)||(9024856-9025035)
chr5 (3-165)||(30327003-30327164)
chr5 (3-165)||(23570590-23570751)
chr5 (81-165)||(27593548-27593632)
chr5 (2-133)||(19319606-19319736)
chr5 (1-59)||(11572794-11572852)
chr5 (1-90)||(11769765-11769854)
[»] chr1 (7 HSPs)
chr1 (1-164)||(49881721-49881886)
chr1 (3-180)||(19102725-19102901)
chr1 (2-179)||(21467683-21467859)
chr1 (104-180)||(45918334-45918410)
chr1 (1-79)||(43385117-43385195)
chr1 (5-79)||(26531814-26531888)
chr1 (1-85)||(3982728-3982812)
[»] chr6 (5 HSPs)
chr6 (3-180)||(33348165-33348341)
chr6 (3-173)||(21986182-21986351)
chr6 (5-133)||(9449611-9449739)
chr6 (1-79)||(15878847-15878925)
chr6 (9-90)||(16705608-16705689)
[»] chr7 (2 HSPs)
chr7 (1-142)||(6677129-6677271)
chr7 (1-135)||(18290472-18290606)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-86)||(12569-12654)
[»] scaffold0050 (1 HSPs)
scaffold0050 (2-135)||(11078-11211)
[»] scaffold2049 (1 HSPs)
scaffold2049 (11-85)||(260-334)
[»] scaffold0012 (1 HSPs)
scaffold0012 (11-85)||(94762-94836)


Alignment Details
Target: scaffold0284 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 832 - 1011
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  832 gtcatctcacttatatgttattcaaaatctactcttctatccactatagaacttttactcacacttgacacattaacatctcttattcaaatttgcaact 931  T
Q  101 ctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  932 ctctgtgtccataattacatgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 1011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7590 - 7668
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    ||||||| |||||||||||  ||||||| |||||||| ||||| | || ||| | ||||| || |||||||||||||||    
T  7590 gtcatctaacttatatgttgctcaaaatctactcttccatccaatgtataacgttaactcgcatttgacacattaacat 7668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 6424 - 6501
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaaca 78  Q
    ||||||||||||||||||| ||||| || || | ||  ||||| ||| |||||| |||||||| |||| |||||||||    
T  6424 gtcatctcacttatatgttgttcaacatctatttttgcatccaatatggaactttaactcacatttgatacattaaca 6501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 50241563 - 50241399
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||    
T  50241563 gtcatctcacttatatgttattcataatttactcttatatccactatagaattttaactcacacttgacacattaacattttttattcaagtttgcaact 50241464  T
Q  101 ctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaa 165  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50241463 ctctgtgtccataattacgtgacatagtcaaataatatcaaatgaagacaccatatgtttaaaaa 50241399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 14045470 - 14045293
Alignment:
Q  3 catctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactct 102  Q
    ||||||||||||||||| |||||| |||||  ||| ||||| |||| || || |||||||||| ||||||||||||  |||||||||||||||||| |||    
T  14045470 catctcacttatatgttgttcaaattttaccattccatccaatataaaattttaactcacactcgacacattaacacctcttattcaaatttgcaagtct 14045371  T
Q  103 ctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    |||||||||||||||||||| |||||||||||  ||||||  |||| || |||||||||||||  |||||| ||||||    
T  14045370 ctgtgtccataattacgtgatatagtcaaatatgatcaaaggaagatacaatatgtttaaaaaagtttgttggtgatg 14045293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 2251056 - 2250895
Alignment:
Q  3 catctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactct 102  Q
    ||||||||||||||||| |||||||||||   ||| ||||| |||| |  || |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  2251056 catctcacttatatgttgttcaaaatttatcattccatccaatataaatttttaactcatacttgacacattaacatctcttattcaaatttgcaactct 2250957  T
Q  103 ctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaa 165  Q
    |  ||| ||||||||||||| |||||||||||| ||||||  || | || |||||||||||||    
T  2250956 c-ctgttcataattacgtgatatagtcaaataagatcaaaggaaaatacaatatgtttaaaaa 2250895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 39184242 - 39184079
Alignment:
Q  2 tcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactc 101  Q
    ||||||| |||||||||| | ||||| |||| |||| ||||| |||| |  || ||| ||||||||||||||| | |  |||||||||||||||||||||    
T  39184242 tcatctcgcttatatgttgtccaaaacttacccttccatccaatataaactttaaacccacacttgacacatttatacctcttattcaaatttgcaactc 39184143  T
Q  102 tctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaa 165  Q
    |||||||||||||||| |||| |||||||||||| ||||||  ||||  | |||||||||||||    
T  39184142 tctgtgtccataattatgtgatatagtcaaataagatcaaaggaagatgcaatatgtttaaaaa 39184079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 20790393 - 20790217
Alignment:
Q  3 catctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactct 102  Q
    ||||||||||||||||| || ||||||||   ||| ||||| |||| |  || |||||| ||||||||||||||||  ||||||||||||||||||||||    
T  20790393 catctcacttatatgttgttaaaaatttatcattccatccaatataaatttttaactcatacttgacacattaacacctcttattcaaatttgcaactct 20790294  T
Q  103 ctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    |  ||| ||||||||||||| |||||||||||| || |||  |||| || |||||||||||||  |||||| ||||||    
T  20790293 c-ctgttcataattacgtgatatagtcaaataagattaaaggaagatacaatatgtttaaaaaagtttgttggtgatg 20790217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 40057853 - 40057690
Alignment:
Q  2 tcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactc 101  Q
    ||||||| |||||||||| | |||||  ||| |||| ||||| |||| |  || |||||||| ||||| |||| | |  || ||||||||||||||||||    
T  40057853 tcatctcgcttatatgttgtccaaaacctacccttccatccaatataaatttttaactcacatttgactcatttatacctcctattcaaatttgcaactc 40057754  T
Q  102 tctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaa 165  Q
    ||||||||| |||||| |||| |||||||||||| ||||||  ||||  | |||||||||||||    
T  40057753 tctgtgtccctaattatgtgatatagtcaaataagatcaaaggaagatgcaatatgtttaaaaa 40057690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 20779644 - 20779566
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    ||||||||||||||||||| |||||||| |||||||| ||||| | || ||  | |||||||| |||||||||||||||    
T  20779644 gtcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgttaactcacatttgacacattaacat 20779566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32263116 - 32263191
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaa 76  Q
    ||||||||||||||||||| ||| |||| |||||||| ||||| |||||| ||| ||| ||| ||||| |||||||    
T  32263116 gtcatctcacttatatgttcttcgaaatctactcttccatccaatatagagctttaacccacgcttgaaacattaa 32263191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 10020196 - 10020118
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    ||||||||||||||||||| |||||||| ||| |||| || || |||||||||  || |||||||||| || |||||||    
T  10020196 gtcatctcacttatatgttgttcaaaatctacccttccattcaatatagaactctaaatcacacttgatacgttaacat 10020118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 12744020 - 12744102
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttct 83  Q
    ||||||||||||||||||||||||| || |||| ||| ||| | | |||||||| |||||| | |||||| |||| |||||||    
T  12744020 gtcatctcacttatatgttattcaacatctactattccatcaattgtagaactttaactcatatttgacatattagcatttct 12744102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 14044370 - 14044292
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    ||||| ||||||| ||||| ||||| ||||||| ||  ||||| ||| |||||| || |||||||||||||||||||||    
T  14044370 gtcatatcacttaaatgttgttcaacatttactattgcatccaatatggaactttaaatcacacttgacacattaacat 14044292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 40416376 - 40416243
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    |||||||| |||| || ||||||||| |||||| ||  ||||| | |||||| |||||||| |||| |||||||||||| ||||| |||| | ||  |||    
T  40416376 gtcatctcgcttaaatattattcaaactttactatttcatccaatgtagaacgtcaactcatacttaacacattaacatctcttaatcaagtgtgtgact 40416277  T
Q  101 ctctgtgtccataattacgtgacatagtcaaataa 135  Q
     | ||| || ||||||| |||||||||| ||||||    
T  40416276 at-tgtctctataattatgtgacatagtaaaataa 40416243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 18456 - 18635
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||  |||||||| |||||||||| |||||||||    
T  18456 gtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgactaattaacatctcttattcaagtttgcaact 18555  T
Q  101 ctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  || ||||||||||    
T  18556 ctctgtgtccataattacgtgacatagtcaaataatatcaaatgaagacaccatatgtttaaaaaggttggttagtgatg 18635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 37122 - 36959
Alignment:
Q  2 tcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactc 101  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||||||    
T  37122 tcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaacatctcttattcaagtttgcaactc 37023  T
Q  102 tctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaa 165  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  37022 tctgtgtccataattacgtgacgtagtcaaataatatcaaatgaagacaccatatgtttaaaaa 36959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 1451 - 1376
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaa 76  Q
    |||||||||||||||| ||||||||||| || ||||| || || | | |||| |  ||||||||||||||||||||    
T  1451 gtcatctcacttatatattattcaaaatctattcttccattcaatgttgaacattcactcacacttgacacattaa 1376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 314406 - 314227
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||| || ||||||| |||||||||||||||| |||||||||| |||||||||    
T  314406 gtcatctcacttatatgttattcaaaatctactcttctatccaccatagaattttaactcacgcttgacacattaacatctcttattcaagtttgcaact 314307  T
Q  101 ctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  || ||||||||||    
T  314306 ctctgtgtccataattacgtgacatagtcaaataatatcaaatgaagacaccatatgtttaaaaaggttggttagtgatg 314227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 6554624 - 6554445
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||| || |||||||||||||||||||||||| |||||||||| |||||||||    
T  6554624 gtcatctcacttatatgttattcaaaatctactcttccatccactatagaattttaactcacacttgacacattaacatctcttattcaagtttgcaact 6554525  T
Q  101 ctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||  || ||||||||||    
T  6554524 ctctgtgtccataattacgtgacatagtcaaataatatcaaatgaagacaccatatatttaaaaaggttagttagtgatg 6554445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 35696063 - 35695938
Alignment:
Q  46 atagaacttcaactcacacttgacaca--ttaacatttcttattcaaatttgcaactctctgtgtccataattacgtgacatagtcaaataatatcaaat 143  Q
    |||||| || |||||||||||||||||  ||||||| | ||||| || |||||||||||| |||||||||||||||||||||  |||||||| || ||||    
T  35696063 atagaattttaactcacacttgacacacattaacatctattatttaagtttgcaactctccgtgtccataattacgtgacatgttcaaataagataaaat 35695964  T
Q  144 caagacaccatatgtttaaaaatatt 169  Q
     || ||   |||||||||||||||||    
T  35695963 gaaaacgtaatatgtttaaaaatatt 35695938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 42727173 - 42727305
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    |||||||||| |||||||||||||| || ||||| |  ||| | | |||||||| |||||| | ||||||||||||||| |||  |||||   || ||||    
T  42727173 gtcatctcacatatatgttattcaatatctactcattcatctattgtagaactttaactcatatttgacacattaacatgtctctttcaagcgtggaact 42727272  T
Q  101 ctctgtgtccataattacgtgacatagtcaaat 133  Q
     | ||||||| |||||| ||||||||| |||||    
T  42727273 ttatgtgtccctaattatgtgacatagccaaat 42727305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 13918326 - 13918248
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    ||||||||| ||||||||| || ||||| |||||||| ||||| | || ||| | |||||||| |||||||||||||||    
T  13918326 gtcatctcaattatatgttgttgaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacat 13918248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 8057690 - 8057767
Alignment:
Q  2 tcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    |||| ||||||||||| |  |||||||||||||||  ||||| |||||||||| |||||| | |||||| ||||||||    
T  8057690 tcatatcacttatatgcttatcaaaatttactcttgcatccaatatagaactttaactcatagttgacaaattaacat 8057767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6561065 - 6560991
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacatta 75  Q
    ||||||||||||||||||| || || || |||| || |||||| ||| |||||| |||||||| |||| ||||||    
T  6561065 gtcatctcacttatatgttgtttaacatctacttttgtatccaatatggaactttaactcacatttgatacatta 6560991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39977281 - 39977199
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttct 83  Q
    ||||||||||||||||||||||||| || |||| ||| ||| | | |||||||| |||||| | |||| | |||| |||||||    
T  39977281 gtcatctcacttatatgttattcaacatctactattccatcaattgtagaactttaactcatatttgatatattagcatttct 39977199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 3774707 - 3774626
Alignment:
Q  4 atctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttctta 85  Q
    |||||||| ||||||| |||   || ||||||| ||| || | |||||| ||||||||||||| |||||||||||| |||||    
T  3774707 atctcactcatatgttgttcgctatctactcttttattcaatgtagaacatcaactcacactttacacattaacatatctta 3774626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 9e-69; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 31965844 - 31966023
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||| || |||||| ||||||||||||||| | |||||||||| |||||||||    
T  31965844 gtcatctcacttatatgttattcaaaatctactcttctatctactatagaattttaactcatacttgacacattaacttctcttattcaagtttgcaact 31965943  T
Q  101 ctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  || ||||||||||    
T  31965944 ctctgtgtccataattacgtgacatagtcaaataatatcaaatgaagacaccatatgtttaaaaaggttggttagtgatg 31966023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 24969051 - 24968967
Alignment:
Q  81 tcttattcaaatttgcaactctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaa 165  Q
    |||||||||||||||||||||| |||||||||||||| || | |||||||||||| ||||||  ||||  | |||||||||||||    
T  24969051 tcttattcaaatttgcaactctatgtgtccataattatgtaatatagtcaaataagatcaaaggaagatgcaatatgtttaaaaa 24968967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 20106660 - 20106738
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    |||||||||||||||| ||||||||||| |||||||| ||||| | || ||| | |||||||| |||||||||||||||    
T  20106660 gtcatctcacttatattttattcaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacat 20106738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 39403826 - 39403968
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatt--tcttattcaaatttgcaa 98  Q
    |||||||||| |||||||| ||||||||||||  ||  || || |||||||||| |||||||| || ||| |||||||||  | | | |||||| || |     
T  39403826 gtcatctcacatatatgttgttcaaaatttaccttttcattcaatatagaactttaactcacatttaacaaattaacattgatttaaatcaaatgtgaag 39403925  T
Q  99 ctctctgtgtccataattacgtgacatagtcaaataatatcaaa 142  Q
    ||||  |||||| ||||||||||||||||||||||||| |||||    
T  39403926 ctcttcgtgtcc-taattacgtgacatagtcaaataatgtcaaa 39403968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 29652568 - 29652483
Alignment:
Q  7 tcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacac--ttgacacattaacatttcttattcaa 90  Q
    ||||||| ||||| || ||||| |||| ||||||||| |||||||||| ||| ||||   ||||||||||||||| ||||| ||||    
T  29652568 tcacttacatgttgtttaaaatctactattctatccaatatagaactttaacacacaaatttgacacattaacatctcttagtcaa 29652483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39835638 - 39835716
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    |||||| ||||||| |  |||||||||| |||| ||| || || |||||||| | |||||||||||||| |||||||||    
T  39835638 gtcatcacacttattttctattcaaaatctactattcaattcaatatagaacgtaaactcacacttgactcattaacat 39835716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 6910424 - 6910335
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaa 90  Q
    ||||||| |||||| || | ||||||||  ||| ||| ||||  |||||||||| ||||||||||| |||| ||||||||| ||| ||||    
T  6910424 gtcatcttacttatgtggtgttcaaaatccacttttccatcctatatagaactttaactcacacttaacacgttaacattttttaatcaa 6910335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 25547027 - 25546947
Alignment:
Q  2 tcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttc 82  Q
    |||| ||||||||||||| ||||| || |  ||||  ||||| | |||||||| |||||||| ||||||||||| ||||||    
T  25547027 tcatatcacttatatgtttttcaacatatgttcttgcatccaatgtagaactttaactcacatttgacacattaccatttc 25546947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 1e-64; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 41527033 - 41527197
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||| || |||||||||| |||||||||    
T  41527033 gtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaatatctcttattcaagtttgcaact 41527132  T
Q  101 ctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaa 165  Q
    |||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  41527133 ctctgtgttcataattacgtgacatagtcagataatatcaaatgaagacaccatatatttaaaaa 41527197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 361128 - 360952
Alignment:
Q  3 catctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactct 102  Q
    ||||| ||||||||||| |||||||||||   ||| ||||| |||| |  || |||||| ||||||||||||||||  ||||||||||||||||||||||    
T  361128 catcttacttatatgttgttcaaaatttatcattccatccaatataaatttttaactcatacttgacacattaacacctcttattcaaatttgcaactct 361029  T
Q  103 ctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    |  ||| ||||||||||||| |||||||||||| ||||||  |||| || |||||||||||||  |||||| ||||||    
T  361028 c-ctgttcataattacgtgatatagtcaaataagatcaaaagaagatacaatatgtttaaaaaagtttgttggtgatg 360952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 40886939 - 40886775
Alignment:
Q  2 tcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacactt-gacacattaacatttcttattcaaatttgcaact 100  Q
    ||||||| |||||||||| |||||||  ||| |||| ||| | |||| |  || ||||||||||| |||||||| | |  ||||||||||||||||||||    
T  40886939 tcatctcgcttatatgttgttcaaaacctacccttccatcaaatataaatttttaactcacacttagacacatttatacctcttattcaaatttgcaact 40886840  T
Q  101 ctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaa 165  Q
    ||||||||||| ||||| |||| |||||||||||| ||||||  ||||  | |||||||||||||    
T  40886839 ctctgtgtccacaattatgtgatatagtcaaataagatcaaaggaagatgcaatatgtttaaaaa 40886775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15342301 - 15342418
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    ||||||||||||||||||| |||||||| || ||||| ||||| |||| ||||| ||||||||||| | ||||||| || ||||| |||| | || ||||    
T  15342301 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtgaaact 15342400  T
Q  101 ctctgtgtccataattac 118  Q
    || || |||| |||||||    
T  15342401 ctttgcgtccgtaattac 15342418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15431366 - 15431483
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    ||||||||||||||||||| |||||||| || ||||| ||||| |||| ||||| ||||||||||| | ||||||| || ||||| |||| | || ||||    
T  15431366 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtgaaact 15431465  T
Q  101 ctctgtgtccataattac 118  Q
    || || |||| |||||||    
T  15431466 ctttgcgtccgtaattac 15431483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15522670 - 15522787
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    ||||||||||||||||||| |||||||| || ||||| ||||| |||| ||||| ||||||||||| | ||||||| || ||||| |||| | || ||||    
T  15522670 gtcatctcacttatatgttgttcaaaatgtaatcttccatccaatatataactttaactcacacttaatacattaatatctcttaatcaagtgtgaaact 15522769  T
Q  101 ctctgtgtccataattac 118  Q
    || || |||| |||||||    
T  15522770 ctttgcgtccgtaattac 15522787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 45245395 - 45245255
Alignment:
Q  2 tcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactc 101  Q
    ||||||| |||||||||| | |||||  ||| |||| ||||| |||| |  || ||||||||||||||||||| |    ||||||||| |||||||||||    
T  45245395 tcatctcgcttatatgttgtccaaaacctacccttcgatccaatataaatttttaactcacacttgacacatttattcctcttattcagatttgcaactc 45245296  T
Q  102 tctgtgtccataattacgtgacatagtcaaataatatcaaa 142  Q
    | ||| |||||||||| |||| ||||| |||||| ||||||    
T  45245295 tttgtatccataattatgtgatatagttaaataagatcaaa 45245255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8358803 - 8358881
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    ||||||||||||||||||| |||||||| |||||||| ||| | | || ||| | |||||||| |||||||||||||||    
T  8358803 gtcatctcacttatatgttgttcaaaatctactcttccatcgagtgtataacgttaactcacatttgacacattaacat 8358881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 17888130 - 17888052
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    ||||||||||||||||||| |||||||| |||||||| ||||| | || ||  | |||||||| |||||||||||||||    
T  17888130 gtcatctcacttatatgttgttcaaaatctactcttccatccagtgtataatgttaactcacatttgacacattaacat 17888052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 14377002 - 14376926
Alignment:
Q  2 tcatctcacttatatgttattcaaaatttactcttctatccactatagaa-cttcaactcacacttgacacattaac 77  Q
    |||||||||||||||||||||||| | || |||||||||||| | |||||  ||||||||| | |||||||||||||    
T  14377002 tcatctcacttatatgttattcaacactttctcttctatccattgtagaattttcaactcatatttgacacattaac 14376926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 21586497 - 21586579
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttct 83  Q
    ||||||||||||||||||||||||| || |||| ||| ||| | | |||||||| |||||| | |||||| |||| |||||||    
T  21586497 gtcatctcacttatatgttattcaacatctactattccatcaattgtagaactttaactcatatttgacatattagcatttct 21586579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 5e-64; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 9025035 - 9024856
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||||||||||||||||| |||||||||| |||||||||    
T  9025035 gtcatctcacttatatgttattcaaaatctactcttctatccactatataattttaactcacacttgacacattaacatctcttattcaattttgcaact 9024936  T
Q  101 ctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    || | | |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  || ||||||||||    
T  9024935 ctttttatccataattacgtgacatagtcaaataatatcaaacgaagacaccatatgtttaaaaaagttggttagtgatg 9024856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 30327003 - 30327164
Alignment:
Q  3 catctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactct 102  Q
    ||||||||||||||||| |||||||||||   ||  ||||| |||| |  || |||||| ||||||||||||||||  ||||||||||||||||||||||    
T  30327003 catctcacttatatgttgttcaaaatttatcatttcatccaatataaatttttaactcatacttgacacattaacacctcttattcaaatttgcaactct 30327102  T
Q  103 ctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaa 165  Q
    |  ||| ||||||||||||| |||||||||||| ||||||  |||| || |||||||||||||    
T  30327103 c-ctgttcataattacgtgatatagtcaaataagatcaaaggaagatacaatatgtttaaaaa 30327164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 23570590 - 23570751
Alignment:
Q  3 catctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactct 102  Q
    ||||||| ||||||||| |||||||||||   ||| ||||| |||| |  || |||||| ||||||||||||||||  ||||||||||||||||||||||    
T  23570590 catctcatttatatgttgttcaaaatttatcattccatccaatataaatttttaactcatacttgacacattaacacctcttattcaaatttgcaactct 23570689  T
Q  103 ctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaa 165  Q
     | ||| ||||||||||||| |||||||||||| ||||||  |||| || ||||||| |||||    
T  23570690 -tatgttcataattacgtgatatagtcaaataagatcaaaggaagatacaatatgttaaaaaa 23570751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 27593548 - 27593632
Alignment:
Q  81 tcttattcaaatttgcaactctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaa 165  Q
    |||||||||||||||||||||| ||||||||||| || |||| |||||||||||| ||||||  ||||  | |||||||||||||    
T  27593548 tcttattcaaatttgcaactctatgtgtccataactatgtgatatagtcaaataagatcaaaggaagatgcaatatgtttaaaaa 27593632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 19319606 - 19319736
Alignment:
Q  2 tcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactc 101  Q
    |||||| ||||||||||| |||||||| |||  ||| ||| | |||| ||||| |||||||||| || |||| || || ||||| |||| | ||||||||    
T  19319606 tcatcttacttatatgtttttcaaaatatacg-ttccatcaaatataaaactttaactcacactagatacataaaaatctcttaatcaagtgtgcaactc 19319704  T
Q  102 tctgtgtccataattacgtgacatagtcaaat 133  Q
    | || |||  |||||| |||||||||||||||    
T  19319705 tgtgcgtctgtaattaagtgacatagtcaaat 19319736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11572794 - 11572852
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaact 59  Q
    |||||||||||||||| || ||||||||||| ||||| ||||| |||| ||||| ||||    
T  11572794 gtcatctcacttatatatttttcaaaatttattcttccatccaatatacaactttaact 11572852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 11769765 - 11769854
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaa 90  Q
    |||| |||| |||| ||||  ||||||| |||||||| ||||| | | |||||| |||| | ||||||||||||||||| ||||| ||||    
T  11769765 gtcacctcagttatgtgttgatcaaaatctactcttccatccaattttgaactttaactaatacttgacacattaacatctcttaatcaa 11769854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 49881886 - 49881721
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactata--gaacttcaactcacacttgacacattaacatttcttattcaaatttgcaa 98  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||  ||| || |||| |||||| ||||||||||||  ||||||||| |||||||    
T  49881886 gtcatctcacttatatgttattcaaaatcttctcttctatccactatatagaattttaacttacacttaacacattaacatcgcttattcaagtttgcaa 49881787  T
Q  99 ctctctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaa 164  Q
    |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||    
T  49881786 ctctctgtgtccatgattacatgacatagtcaaataatatcaaatgaagacaccatacgtttaaaa 49881721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 19102725 - 19102901
Alignment:
Q  3 catctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactct 102  Q
    ||||||||||||||||| |||||||||||   ||| ||||| |||| |  || |||||| ||||||||||||||||  ||||||||||||||||||||||    
T  19102725 catctcacttatatgttgttcaaaatttatcattccatccaatataaatttttaactcatacttgacacattaacacctcttattcaaatttgcaactct 19102824  T
Q  103 ctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    |  ||| ||||||||||||| |||||||||||| ||||||  |||| || |||||||||||||  |||||| ||||||    
T  19102825 c-ctgttcataattacgtgatatagtcaaataagatcaaaggaagatacaatatgtttaaaaaagtttgttggtgatg 19102901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 21467683 - 21467859
Alignment:
Q  2 tcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactc 101  Q
    |||||||||||||||||| |||||||||||   ||| ||||| |||| |  || |||||| |||||||| |||||||  ||||||||||||||| |||||    
T  21467683 tcatctcacttatatgttgttcaaaatttatcattccatccaatataaatttttaactcatacttgacaaattaacacctcttattcaaatttgtaactc 21467782  T
Q  102 tctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgat 179  Q
    ||  ||| ||||||||||||| |||||||||||| ||||||  |||| || |||||||||||||  |||||| |||||    
T  21467783 tca-tgttcataattacgtgatatagtcaaataagatcaaaggaagatacaatatgtttaaaaaagtttgttggtgat 21467859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 45918334 - 45918410
Alignment:
Q  104 tgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  || ||||||||||    
T  45918334 tgtgtccataattacgtgacatagtcaaataatatcaaatgaagacaccatatgtttaaaaaggttagttagtgatg 45918410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 43385117 - 43385195
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    |||||||||| |||||||||||||| || |||| ||| ||| | | |||||||| |||||| |||||||| ||||||||    
T  43385117 gtcatctcacatatatgttattcaacatctactattccatcaattctagaactttaactcatacttgacatattaacat 43385195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 26531814 - 26531888
Alignment:
Q  5 tctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    ||||||||| |||||  |||| ||||||||||  || || | ||||||||||||||||| |||||| ||||||||    
T  26531814 tctcacttacatgtttatcaatatttactcttacattcaatgtagaacttcaactcacatttgacaaattaacat 26531888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 3982812 - 3982728
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttctta 85  Q
    ||||||||| | ||||| | || ||||| ||  |||||||| |  ||| ||||| |||||||||||||||||||||||| |||||    
T  3982812 gtcatctcattcatatggtgtttaaaatctatccttctatctaacatataactttaactcacacttgacacattaacatctctta 3982728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 33348165 - 33348341
Alignment:
Q  3 catctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactct 102  Q
    ||||||||||||||||| |||||||||||   ||| ||||| |||| |  || |||||| |||||||||||||| |  ||||||||||||||||||||||    
T  33348165 catctcacttatatgttgttcaaaatttatcattccatccaatataaatatttaactcatacttgacacattaatacctcttattcaaatttgcaactct 33348264  T
Q  103 ctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgttagtgatg 180  Q
    |  ||| ||||||||||||| |||||||||||| ||| ||  |||| || |||||||||||||  |||||| ||||||    
T  33348265 c-atgttcataattacgtgatatagtcaaataagatcgaaggaagatacaatatgtttaaaaaagtttgttggtgatg 33348341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 21986351 - 21986182
Alignment:
Q  3 catctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactct 102  Q
    ||||||| ||||||||| |||||||||||   ||| ||||| |||| |  || |||||| ||||||||||| ||||  ||||||||||||||||||||||    
T  21986351 catctcaattatatgttgttcaaaatttatcattccatccaatataaatttttaactcatacttgacacatcaacacctcttattcaaatttgcaactct 21986252  T
Q  103 ctgtgtccataattacgtgacatagtcaaataatatcaaatcaagacaccatatgtttaaaaatatttgtt 173  Q
    |  ||| ||||||||| ||| |||||||||||| ||||||  |||| ||  |||||||||||| |||||||    
T  21986251 c-ctgttcataattacatgatatagtcaaataagatcaaaggaagatacagtatgtttaaaaaaatttgtt 21986182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 9449611 - 9449739
Alignment:
Q  5 tctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactctct 104  Q
    ||||||||||||||| |||||||| ||||| || ||||| | |||||    |||||||||||||||| ||||||| ||||| |||| | ||||||| | |    
T  9449611 tctcacttatatgtttttcaaaatatactcatccatccaatgtagaatggtaactcacacttgacacgttaacatctcttaatcaagtgtgcaactattt 9449710  T
Q  105 gtgtccataattacgtgacatagtcaaat 133  Q
    ||||   |||||| |||| ||||||||||    
T  9449711 gtgtttgtaattatgtgatatagtcaaat 9449739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 15878925 - 15878847
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacat 79  Q
    ||||||||| ||||||||| |||||||| |||||||| ||||| | || ||| | |||||||| |||||||||||||||    
T  15878925 gtcatctcaattatatgttgttcaaaatctactcttccatccaatgtataacgttaactcacatttgacacattaacat 15878847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 16705689 - 16705608
Alignment:
Q  9 acttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaa 90  Q
    |||||||||||  |||| ||||||||||  ||||| |||  |||||||||||||  ||||||||||||||| | ||||||||    
T  16705689 acttatatgtttatcaacatttactcttaaatccattatgaaacttcaactcacgtttgacacattaacatcttttattcaa 16705608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 6677129 - 6677271
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatt--tcttattcaaatttgcaa 98  Q
    |||||||||| |||||||| ||||||||||||  ||  || || ||||||| || ||||||||||| ||| |||||||||  | | | |||||| || |     
T  6677129 gtcatctcacatatatgttgttcaaaatttaccttttcattcaatatagaattttaactcacacttaacaaattaacattgatttaaatcaaatgtgaag 6677228  T
Q  99 ctctctgtgtccataattacgtgacatagtcaaataatatcaaa 142  Q
    ||||  |||||| ||||||||||||||||||||||||| |||||    
T  6677229 ctcttcgtgtcc-taattacgtgacatagtcaaataatgtcaaa 6677271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 18290472 - 18290606
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaact 100  Q
    ||||||||||||||||||| || ||||| |||||||| ||||| | || | | | |||||||| ||| ||||| ||||| || || |||| | ||  |||    
T  18290472 gtcatctcacttatatgttgtttaaaatctactcttccatccagtgtataccgttaactcacatttgtcacatcaacatatcctaatcaattgtgtgact 18290571  T
Q  101 ctctgtgtccataattacgtgacatagtcaaataa 135  Q
     |||| ||||||||||| || || |||||||||||    
T  18290572 ttctgcgtccataattatgtaacgtagtcaaataa 18290606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 12654 - 12569
Alignment:
Q  1 gtcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttat 86  Q
    ||||||||||||||||||| |||||||| |||| ||| ||||| | || ||||| |||||| |||| | |||||||||| ||||||    
T  12654 gtcatctcacttatatgttgttcaaaatatactattccatccaatgtataactttaactcaaacttcatacattaacatctcttat 12569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 11078 - 11211
Alignment:
Q  2 tcatctcacttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttcttattcaaatttgcaactc 101  Q
    |||| ||||| ||||||||||||| || |||||||  |||||   |||||||| | || | | ||||||||||||||| ||| |||||| | ||||| ||    
T  11078 tcatatcactgatatgttattcaacatctactctttcatccatcgtagaactttagcttaaatttgacacattaacatctctcattcaagtgtgcaaatc 11177  T
Q  102 tctgtgtccataattacgtgacatagtcaaataa 135  Q
    | ||  ||  |||||| |||||||||||||||||    
T  11178 tttgcttctgtaattatgtgacatagtcaaataa 11211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2049 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold2049
Description:

Target: scaffold2049; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 260 - 334
Alignment:
Q  11 ttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttctta 85  Q
    ||||||||| || ||||||| |||||| ||||  | |||||  |||||||||||||| ||||||||||| |||||    
T  260 ttatatgttgttgaaaattttctcttccatccgatgtagaatgtcaactcacacttggcacattaacatctctta 334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 94762 - 94836
Alignment:
Q  11 ttatatgttattcaaaatttactcttctatccactatagaacttcaactcacacttgacacattaacatttctta 85  Q
    ||||||||| || ||||||| |||||| ||||  | |||||  |||||||||||||| ||||||||||| |||||    
T  94762 ttatatgttgttgaaaattttctcttccatccgatgtagaatgtcaactcacacttggcacattaacatctctta 94836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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