View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_51 (Length: 203)
Name: NF0792_low_51
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_51 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 13935697 - 13935589
Alignment:
| Q |
95 |
cagagagaagaagttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggt |
194 |
Q |
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| T |
13935697 |
cagagagaagaagttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggt |
13935598 |
T |
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| Q |
195 |
gaagaagaa |
203 |
Q |
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| T |
13935597 |
gaagaagaa |
13935589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 612812 - 612721
Alignment:
| Q |
106 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
203 |
Q |
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| T |
612812 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
612721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 722474 - 722565
Alignment:
| Q |
106 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
203 |
Q |
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| T |
722474 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
722565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 118229 - 118138
Alignment:
| Q |
106 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
203 |
Q |
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| T |
118229 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
118138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 24820962 - 24821053
Alignment:
| Q |
106 |
agttcagagaaggtttgtttttagttttccatttttgatttggttctgagaatagggtgaatgactatggaggaagggagttttatggtgaagaagaa |
203 |
Q |
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| T |
24820962 |
agttcagagaaggtttgttttgatttttccatttttgatt------tgaggatagaatgaatgactatggaagaatgaagttttatggtgaggaagaa |
24821053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 9000929 - 9000889
Alignment:
| Q |
102 |
aagaagttcagagaaggtttgtttttagttttccatttttg |
142 |
Q |
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| T |
9000929 |
aagaagttcagagaaggtttgttttggattttccatttttg |
9000889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 9010094 - 9010054
Alignment:
| Q |
102 |
aagaagttcagagaaggtttgtttttagttttccatttttg |
142 |
Q |
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| T |
9010094 |
aagaagttcagagaaggtttgttttggattttccatttttg |
9010054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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