View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_6 (Length: 480)
Name: NF0792_low_6
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 8e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 43172929 - 43172743
Alignment:
| Q |
9 |
gaaaagaacgacaacttatacgaacaataaccacaatactaaccaaaaacgaaaacccacagaatcttcaacaattcatcccacacttaacactcccaat |
108 |
Q |
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| T |
43172929 |
gaaaagaacgacaacttatacgtacaataaccacaatactaaccaaaaacgaaaacccacagaatcttcaacaattcatcccacacttaacactcccaat |
43172830 |
T |
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| Q |
109 |
cataatctcaattctttcatacaaacctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatccaacgcaca |
195 |
Q |
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| T |
43172829 |
cataatctcaattctttcatacaaacctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatccaacgcaca |
43172743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 51298142 - 51297956
Alignment:
| Q |
9 |
gaaaagaacgacaacttatacgaacaataaccacaatactaac------caaaaacgaaaacccacagaatcttcaacaattcatcccacacttaacact |
102 |
Q |
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||||||||| |||||| |||| ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51298142 |
gaaaagaacaacaactgatacaaacaataaccacagtattaacaaaaaccaaaaacgaaaacccacagaatcttcaacaattcattccacacttaacact |
51298043 |
T |
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| Q |
103 |
cccaatcataatctcaattctttcatacaaacctcttcactctcaaccagaaaccctactttccttcttcaaatggtttcaatccaa |
189 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||| |||| |
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| T |
51298042 |
cccaatcataatctcaatcctttcatacaaacctcttcactgtcaaccaaaaaccctagtttccttcttcaaatggttccaaaccaa |
51297956 |
T |
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