View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0792_low_8 (Length: 463)

Name: NF0792_low_8
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0792_low_8
NF0792_low_8
[»] scaffold0349 (2 HSPs)
scaffold0349 (144-199)||(15002-15057)
scaffold0349 (144-199)||(8407-8462)
[»] chr6 (10 HSPs)
chr6 (164-229)||(27593815-27593880)
chr6 (164-229)||(27678190-27678255)
chr6 (144-199)||(27718985-27719040)
chr6 (217-306)||(27585392-27585481)
chr6 (141-176)||(27593741-27593776)
chr6 (141-176)||(27678294-27678329)
chr6 (141-176)||(27699138-27699173)
chr6 (141-176)||(27725529-27725564)
chr6 (105-137)||(26654940-26654972)
chr6 (105-137)||(26760910-26760942)
[»] chr1 (5 HSPs)
chr1 (32-64)||(28128984-28129016)
chr1 (32-64)||(28164844-28164876)
chr1 (32-64)||(28129020-28129052)
chr1 (32-64)||(28129056-28129088)
chr1 (307-351)||(28165540-28165584)
[»] scaffold0277 (1 HSPs)
scaffold0277 (355-391)||(5482-5518)


Alignment Details
Target: scaffold0349 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 15002 - 15057
Alignment:
Q  144 aaaatattacgacttgaaccaaatggttaattatctatccaacagtactaacataa 199  Q
    |||||||||| |||||||||||||||||||||| ||||||||| | ||||||||||    
T  15002 aaaatattaccacttgaaccaaatggttaattagctatccaacggaactaacataa 15057  T

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Target: scaffold0349; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 8407 - 8462
Alignment:
Q  144 aaaatattacgacttgaaccaaatggttaattatctatccaacagtactaacataa 199  Q
    |||||||||| ||||||||||||||| |||||| ||||||||| | ||||||||||    
T  8407 aaaatattaccacttgaaccaaatggataattagctatccaacggaactaacataa 8462  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 27593815 - 27593880
Alignment:
Q  164 aaatggttaattatctatccaacagtactaacataacaatgtcttatctttcatgttaattttaca 229  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||| ||| |||||||||||| |||||    
T  27593815 aaatgtttaattagctatccaacagaactaatataacaatgtcctatttttcatgttaatcttaca 27593880  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 27678255 - 27678190
Alignment:
Q  164 aaatggttaattatctatccaacagtactaacataacaatgtcttatctttcatgttaattttaca 229  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||| ||| |||||||||||| |||||    
T  27678255 aaatgtttaattagctatccaacagaactaatataacaatgtcctatttttcatgttaatcttaca 27678190  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 27718985 - 27719040
Alignment:
Q  144 aaaatattacgacttgaaccaaatggttaattatctatccaacagtactaacataa 199  Q
    |||||||||| ||||||||||||||| |||||| ||||||||| | ||||||||||    
T  27718985 aaaatattaccacttgaaccaaatggataattagctatccaacggaactaacataa 27719040  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 306
Target Start/End: Original strand, 27585392 - 27585481
Alignment:
Q  217 tgttaattttacaattacaaatattggaaaaagaaaggttaagttaagggcagaatcagaatggatggagaggctaggtgatgatattta 306  Q
    ||||||||||||||||| |||| |||||||||||||| || |||| |||| |  ||| |||||||| || ||  ||||| ||||||||||    
T  27585392 tgttaattttacaattataaatgttggaaaaagaaagattgagttgaggggaacatctgaatggattgaaagattaggtaatgatattta 27585481  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 27593741 - 27593776
Alignment:
Q  141 ttgaaaatattacgacttgaaccaaatggttaatta 176  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27593741 ttgaaaatattaccacttgaaccaaatggttaatta 27593776  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 27678329 - 27678294
Alignment:
Q  141 ttgaaaatattacgacttgaaccaaatggttaatta 176  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27678329 ttgaaaatattaccacttgaaccaaatggttaatta 27678294  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 27699138 - 27699173
Alignment:
Q  141 ttgaaaatattacgacttgaaccaaatggttaatta 176  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27699138 ttgaaaatattaccacttgaaccaaatggttaatta 27699173  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 27725529 - 27725564
Alignment:
Q  141 ttgaaaatattacgacttgaaccaaatggttaatta 176  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27725529 ttgaaaatattaccacttgaaccaaatggttaatta 27725564  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 26654972 - 26654940
Alignment:
Q  105 aaatggatttgcatgtcattggcaaccaactat 137  Q
    |||||||||||||||||||||| ||||||||||    
T  26654972 aaatggatttgcatgtcattggtaaccaactat 26654940  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 26760942 - 26760910
Alignment:
Q  105 aaatggatttgcatgtcattggcaaccaactat 137  Q
    |||||||||||||||||||||| ||||||||||    
T  26760942 aaatggatttgcatgtcattggtaaccaactat 26760910  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 28128984 - 28129016
Alignment:
Q  32 gaaacttccttctcatcttccgtgtggaccaat 64  Q
    |||||||||||||||||||||||||||||||||    
T  28128984 gaaacttccttctcatcttccgtgtggaccaat 28129016  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 28164844 - 28164876
Alignment:
Q  32 gaaacttccttctcatcttccgtgtggaccaat 64  Q
    |||||||||||||||||||||||||||||||||    
T  28164844 gaaacttccttctcatcttccgtgtggaccaat 28164876  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 28129020 - 28129052
Alignment:
Q  32 gaaacttccttctcatcttccgtgtggaccaat 64  Q
    ||||||||||||||||||||||||||| |||||    
T  28129020 gaaacttccttctcatcttccgtgtggtccaat 28129052  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 28129056 - 28129088
Alignment:
Q  32 gaaacttccttctcatcttccgtgtggaccaat 64  Q
    ||||||||||||||||||||||||||| |||||    
T  28129056 gaaacttccttctcatcttccgtgtggtccaat 28129088  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 28165540 - 28165584
Alignment:
Q  307 aaatcaaacagcctaataactaatgcataaaaaactctgatatat 351  Q
    |||||||||| | ||||||| ||||||| ||||||||||||||||    
T  28165540 aaatcaaacaacttaataaccaatgcatcaaaaactctgatatat 28165584  T

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Target: scaffold0277 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 5482 - 5518
Alignment:
Q  355 atatccaagttaaacttgctagctatttagttaactc 391  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  5482 atatccatgttaaactggctagctatttagttaactc 5518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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