View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0792_low_9 (Length: 461)
Name: NF0792_low_9
Description: NF0792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0792_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 29 - 459
Target Start/End: Original strand, 9909214 - 9909652
Alignment:
| Q |
29 |
aagtaagacttgaataactggcattgaagccacttccaaaagttgaataaaacccatccttgcttttgattttcttcttatgcttcaaatgaactctaaa |
128 |
Q |
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| T |
9909214 |
aagtaggacttgaataactggcatggaagccacttccaaaagttgtagaaaacccatctttgattttgattttcttcttatgcttcaaatgaactctaaa |
9909313 |
T |
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| Q |
129 |
aattcaatttatttctgcaatctgagagagatgaatcattagcaaaccaatgattatatactgtgatgaatgttgaaatagggtacgtgaccaatcaatg |
228 |
Q |
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| T |
9909314 |
aattcaatttatttctgcaatctgagagagatgaatcattagcaaaccaatgattatatactgtgatgaatgttgaaatagggtacgtgaccaatcaatg |
9909413 |
T |
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| Q |
229 |
actaagactatccccaacacacacgtttccatgaatttggtagcaatgtgacatcgt-----aacccatgtgtatgatcctctcc-nnnnnnnnnnnnnn |
322 |
Q |
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| T |
9909414 |
actaagactatccccaacacacacgtttccataaatttggtagcaatgtgacatcgtaacccaacccatgtgtatgatcctctccaaaaaaaacaaaaaa |
9909513 |
T |
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| Q |
323 |
nncatgtgtatgattgtttaaaatcaaagtaagtgcatattcctacgtaatattaaattaaaatcaatacgacattggtgaa---tgaaataacagcatg |
419 |
Q |
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| T |
9909514 |
aacatgtgtatgattgtttaaaatgaaagtaagtgcatattcctacgtaatattaaattaaaatcaatacgacattggtgaaccgtg-aatgacagcatg |
9909612 |
T |
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| Q |
420 |
gaaatcaaattattggttcagtgacagaataatctaccca |
459 |
Q |
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| T |
9909613 |
gaaatcaaattattggttcagtgacagtatatcctaccca |
9909652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 9863151 - 9863007
Alignment:
| Q |
29 |
aagtaagacttgaataactggcattgaagccacttccaaaagttgaataaaacccatccttgcttttgattttcttcttatgcttcaaatgaactctaaa |
128 |
Q |
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| T |
9863151 |
aagtaggacttgaataactggcatggaagccacttccaaaagttgtataaaacccatctttgattttgattttcttcttatgcttcaaatgaactctaaa |
9863052 |
T |
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| Q |
129 |
aattcaatttatttctgcaatctgagagagatgaatcattagcaa |
173 |
Q |
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| T |
9863051 |
aattcaatttatttctgcaatatgagagagatgaatcattagcaa |
9863007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 9878891 - 9878967
Alignment:
| Q |
28 |
caagtaagacttgaataactggcattgaagccacttccaaaagttgaataaaacccatccttgcttttgattttctt |
104 |
Q |
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| T |
9878891 |
caagtaagacttgaataactggcatagaagccacttccaaaagttgtacaaaacccatctttgcttttgattttctt |
9878967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 9898929 - 9899022
Alignment:
| Q |
28 |
caagtaagacttgaataactggcattgaagccacttccaaaagttgaataaaacccatccttgcttttgattttcttcttatgcttcaaatgaa |
121 |
Q |
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| T |
9898929 |
caagtaagacttgaataactggcatagaagccacttccaaaagttgtacaaaacccatcttttcttttgattttcttattgtgctgcaactgaa |
9899022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 9862990 - 9862931
Alignment:
| Q |
249 |
acacgtttccatgaatttggtagcaatgtgacatcgtaacccatgtgtatgatcctctcc |
308 |
Q |
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| T |
9862990 |
acacgtttccttaaatttggtagcaatgtgacatcgtaacacatgtgtatgatcctctcc |
9862931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 9867494 - 9867566
Alignment:
| Q |
28 |
caagtaagacttgaataactggcattgaagccacttccaaaagttgaataaaacccatccttgcttttgattt |
100 |
Q |
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| T |
9867494 |
caagcaagacttgaataactggcatagtagccacttccaaaagttgtacaaaacccatctttgcttttaattt |
9867566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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