View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_high_2 (Length: 417)
Name: NF0793_high_2
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Original strand, 53308916 - 53309317
Alignment:
| Q |
8 |
tatcataggtgcatcatcttcaactagttcttcatctttggctaatttttatgccagtaataatnnnnnnnccaagtacaacaaacttcaaacactctca |
107 |
Q |
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| T |
53308916 |
tatcataggtgcatcatcttcaactagttcttcatctttggctaatttctatgccagtaataataaaaaaaccaagtacaacaaacttcaaacactctca |
53309015 |
T |
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| Q |
108 |
catgggcttgagctggatgatgatcttgtctctagtagtgtagttcctgctgtgacagttgtgttggagggccgttcgatctgccaacgcatcagccttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53309016 |
catgggcttgagctggatgatgatcttgtctctagtagtgtagttcctgctgtgacagttgtgttggagggccgttcgatctgccaacgcatcagccttc |
53309115 |
T |
|
| Q |
208 |
acaaccacggtagctaccaaagtctggccaaggctctccgccagatgtttgtcgattgcacggatgactgcgacgccggtgatcatcatcttgatctttc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53309116 |
acaaccacggtagctaccaaagtctggccaaggctctccgccagatgtttgtcgattgcacggatgactgcgacgccggtgatcatcatcttgatctttc |
53309215 |
T |
|
| Q |
308 |
taatgccattcctggtcatgttattgcctatgaagacatggagaatgatcttcttcttgctggtgatcttacctggaagtaagcatcgatcttgttcatc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53309216 |
taatgccattcctggtcatgttattgcctatgaagacatggagaatgatcttcttcttgctggtgatcttacctggaagtaagcatcgatcttgttcatc |
53309315 |
T |
|
| Q |
408 |
tc |
409 |
Q |
| |
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|| |
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| T |
53309316 |
tc |
53309317 |
T |
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