View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_high_3 (Length: 407)
Name: NF0793_high_3
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 34923398 - 34923766
Alignment:
| Q |
9 |
agcacagacaaactcccaatctcatcaggaatctttccaccaatctcattgttagccaaattcaaatcattcaacttcttccaactatgaatcccctttg |
108 |
Q |
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| T |
34923398 |
agcacagacaaactcccaatctcatcaggaatctttccaccaatctcattgttagccaaattcaaatcattcaacttcttccaactatgaatcccctttg |
34923497 |
T |
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| Q |
109 |
gtagttccccagagagcctattgttgtgaaaatcaagaatcccaagctggccaagattcaccaaactatcaggaagtgaaccagtgaacatattatcacc |
208 |
Q |
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| T |
34923498 |
gtagttccccagagagcctattgttgtgaaaatcaagaatcccaagctggccaagattcaccaaactatcaggaagtgaaccagtgaacatattatcacc |
34923597 |
T |
|
| Q |
209 |
agcagaaaactcaacaagattttccaaccacccaacctcatcaggaacagttccagataaattattcttggacaatatcaacaacgaaaggttccctgct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34923598 |
agcagaaaactcaacaagattttccaaccacccaacctcatcaggaacagttccagataaattattcttggacaatatcaacaacgaaaggttccctgct |
34923697 |
T |
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| Q |
309 |
ccagcaatagtcttcgaaatagaacccgaaaacgagttatgagcaagctcaagaagatacacatgagga |
377 |
Q |
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| T |
34923698 |
ccagcaatagtcttcgaaatagaacccgaaaacgagttatgagcaagctcaagaagatacacatgagga |
34923766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 4196008 - 4195860
Alignment:
| Q |
9 |
agcacagacaaactcccaatctcatcaggaatctttccaccaatctcattgttagccaaattcaaatcattcaacttcttccaactatgaatcccctttg |
108 |
Q |
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|||||||||| ||||||||| || |||||||| || ||||||| |||||| |||||||||||| ||||| | ||||| | |||||||| |||| |
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| T |
4196008 |
agcacagacatactcccaatttcttcaggaattttcccaccaacctcattaccagccaaattcaactcattgagtttcttaagagattgaatcccttttg |
4195909 |
T |
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| Q |
109 |
gtagttccccagagagcctattgttgtgaaaatcaagaatcccaagctg |
157 |
Q |
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| || |||||||| || |||| ||||||| |||||||||||||||||| |
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| T |
4195908 |
gaagctccccagaaagattattcttgtgaagatcaagaatcccaagctg |
4195860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 4195717 - 4195644
Alignment:
| Q |
300 |
ttccctgctccagcaatagtcttcgaaatagaacccgaaaacgagttatgagcaagctcaagaagatacacatg |
373 |
Q |
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||||| |||||| |||||||||| ||| ||||| |||||| |||||| | |||||||||||||||| ||||| |
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| T |
4195717 |
ttcccagctccaccaatagtcttaccaattgaaccagaaaacaagttatcaacaagctcaagaagataaacatg |
4195644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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