View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_high_5 (Length: 367)
Name: NF0793_high_5
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 30780699 - 30780547
Alignment:
| Q |
81 |
atggtaatatcaatattattgtacttgaaacctttagcaagagatatcttcagcacacaactcttgttcgcaagcagacaaagtgaaaccaaa-aggaaa |
179 |
Q |
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| T |
30780699 |
atggtaatatcaatattattgtacttgaaacctttagcaagagatatcttcagcacacaactcttgttcgcaagcaggcaaagtgaaaccaaagaggaaa |
30780600 |
T |
|
| Q |
180 |
atatcatgccacgacacccccaagtccccacatacatcctaattgttatggttc |
233 |
Q |
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| T |
30780599 |
atatcatgccacgacaccccc-agtccccacatacatcctaattgttatggttc |
30780547 |
T |
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