View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_low_1 (Length: 576)
Name: NF0793_low_1
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 80 - 545
Target Start/End: Complemental strand, 41486805 - 41486340
Alignment:
| Q |
80 |
cacagagcatcaagatataaatatataaaacttccagctaattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaagaa |
179 |
Q |
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| T |
41486805 |
cacagagcatcaagatataaatatataaaacttccagctaattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaagaa |
41486706 |
T |
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| Q |
180 |
tataacgcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgatttaaaatgaatttaacttcaagacaaaaatttaaaccag |
279 |
Q |
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| T |
41486705 |
tataacgcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgatttcaaatgaatttaacttcaagacaaaaatttaaaccag |
41486606 |
T |
|
| Q |
280 |
actacaaaagggagacaattgataccacctactcgtcgtgattaattttcaacataaatttcaataatcaacaaattccaaaaaacttcaactcctttca |
379 |
Q |
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| T |
41486605 |
actacaaaagggagacaattgataccacctactcgtcgtgattaattttcaacataaatttcaataatcaacaatttccaaaaaacttcaactcctttca |
41486506 |
T |
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| Q |
380 |
aagttttaaaacaaaagtcatacacattatctgctaaaagagtactcctacatgataagtaactatatataacaaccatacgaagtatcacaaggcacta |
479 |
Q |
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| T |
41486505 |
aagttttaacacaaaagtcatacacattatctgctaaaagagtactcctacatgataagtaactatatataacaaccatacgaagtatcacaaggcacta |
41486406 |
T |
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| Q |
480 |
accattggcataatgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatat |
545 |
Q |
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| T |
41486405 |
accattggcataatgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatat |
41486340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 142 - 459
Target Start/End: Complemental strand, 41487610 - 41487294
Alignment:
| Q |
142 |
gctaattgttataaaaacagttcaaactaaatcaagaatataac-gcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgat |
240 |
Q |
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| T |
41487610 |
gctaattgtta-aagaacagttcaaactaactcaagactataaatggttttttattgtatggaaa-------atgctttatttttaggctcaggtacgat |
41487519 |
T |
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| Q |
241 |
ttaaaatgaatttaactt--------caagacaaaaatttaaaccagactacaaaagggagacaattgataccacctactcgtcgtgattaattttcaac |
332 |
Q |
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| T |
41487518 |
ttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacagg-agacgattgataccaccaactcgtctcgattactttttaac |
41487420 |
T |
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| Q |
333 |
ataaatttcaataatcaacaaattccaaaaaacttcaactcctttcaaagttttaaaacaaaagtcatacacattatctgctaaaagagtactcctacat |
432 |
Q |
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| T |
41487419 |
atatattttagtaatcaacaatttc-aaaaaacttcaactcgttacaaagttttaaaccttaagtcacaagcattatctgctaaaaaagtgctcctacat |
41487321 |
T |
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| Q |
433 |
gataagtaactatatataacaaccata |
459 |
Q |
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| T |
41487320 |
gataagtaatgatatataacaaccata |
41487294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 261 - 401
Target Start/End: Complemental strand, 40753805 - 40753660
Alignment:
| Q |
261 |
agacaaaaatttaaaccagactacaaaagggagacaattga---taccacct---actcgtcgtgattaattttcaacataaatttcaataatcaacaaa |
354 |
Q |
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||||||||||||||||||| | ||||||||||||| ||||| |||||||| |||| | |||||| |||| ||||| ||||| |||||||| || |
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| T |
40753805 |
agacaaaaatttaaaccaggcaacaaaagggagacgattgatagtaccacctaccactcaccttgattactttttgacatatgtttcagtaatcaac-aa |
40753707 |
T |
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| Q |
355 |
ttccaaaaaacttcaactcctttcaaagttttaaaacaaaagtcata |
401 |
Q |
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| T |
40753706 |
tttcaaaaaacttcaacttgtttcgaagttttaacccaaaagtcata |
40753660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 41479473 - 41479424
Alignment:
| Q |
257 |
ttcaagacaaaaatttaaaccagactacaaaagggagacaattgataccac |
307 |
Q |
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|||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
41479473 |
ttcaagacaaaaatttaaaccaaactac-aaagagagacaattgataccac |
41479424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 40753958 - 40753902
Alignment:
| Q |
119 |
aattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaa |
176 |
Q |
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| T |
40753958 |
aattttttttaaggcaacatctagctgattgtt-taaaaacagttcaaactaaatcaa |
40753902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 40753883 - 40753830
Alignment:
| Q |
168 |
ctaaatcaagaatataacgcttttttattgtatggaaatgatataatgctttattttta |
226 |
Q |
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| T |
40753883 |
ctaaatcaagaatataatgctttt-----gtatggaaatgatataatgctttatcttta |
40753830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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