View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_low_12 (Length: 396)
Name: NF0793_low_12
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 161 - 396
Target Start/End: Complemental strand, 48707483 - 48707248
Alignment:
| Q |
161 |
agacttttcttgttaatggtatgaacttttcagatgcaaatattttcttctgcttcttcccttaaacaagaatttttcatggcatgaactcttcagattc |
260 |
Q |
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| T |
48707483 |
agacttttcttgttaatggtatgaacttttcagatgcaaatattttcttctgcttcttctcctaaacaagaatttttcatggcatgaactcttcagatta |
48707384 |
T |
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| Q |
261 |
aaagaagtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacataaattcgattcattcctgataaactatatcaacaagctttccaa |
360 |
Q |
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| T |
48707383 |
aaagaagtgtctttggttttcgtgactgcaatgaaataaaccatgttacataacataaattcgattcattcctgataaactatatcaacaagctttccaa |
48707284 |
T |
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| Q |
361 |
gttttcttgatttctggtatgcatttagttgaagaa |
396 |
Q |
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| T |
48707283 |
gttttcttgatttctggtatgcatttagttgaagaa |
48707248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 48708037 - 48707901
Alignment:
| Q |
29 |
aaaagggacacattaaaaacatttagtaataatataaacaatctcgaatacttatccattcagaatgtacactctcatgtgaaggaaaacaatttgtggc |
128 |
Q |
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| T |
48708037 |
aaaagggacacattaaaaacatttagtaataatataaacaatctcgaatacttatccattcagaatgtacactctc--gtgaaggaaaacaatttgtggc |
48707940 |
T |
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| Q |
129 |
aaccttgctactctgattgaacgaatgtttgaagacttt |
167 |
Q |
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| T |
48707939 |
aaccttgctactctgattgaacgaatgtttgaagacttt |
48707901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 130 - 309
Target Start/End: Original strand, 13856581 - 13856760
Alignment:
| Q |
130 |
accttgctactctgattgaacgaatgtttgaagacttttcttgttaatggtatgaacttttcagatgcaaatattttcttctgcttcttcccttaaacaa |
229 |
Q |
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||||||||||||||||||||||| || || ||||||||| ||||| |||| |||||| |||||||||||||| |||||||||||||||| | |||||| |
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| T |
13856581 |
accttgctactctgattgaacgagtgatttaagacttttattgttcatggcatgaacatttcagatgcaaatcttttcttctgcttcttatccgaaacaa |
13856680 |
T |
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| Q |
230 |
gaatttttcatggcatgaactcttcagattcaaagaagtgtctttggttttggtgactgcaatgaaataaaccatgttac |
309 |
Q |
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| T |
13856681 |
ggatttttcatggcatgaattcttcagattcaaagaagtgtctttagttttggtaactgctatgaaataaaccatgttac |
13856760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 16021641 - 16021795
Alignment:
| Q |
63 |
taaacaatctcgaatacttatccat-tcagaatgtacactctcatgtgaaggaaaacaatttgtggcaaccttgctactctgattgaacgaatgtttgaa |
161 |
Q |
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|||||||||||||| ||||| ||| |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |
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| T |
16021641 |
taaacaatctcgaaaacttacccaactcagaatgtacactgtcacatgaaggaaaacaatttgcgg-aaccttgctactctgcttgaacgaatgtttgaa |
16021739 |
T |
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| Q |
162 |
gacttttcttgttaatggtatgaacttttcagatgcaaatattttcttctgcttct |
217 |
Q |
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| T |
16021740 |
ggctttcgttgttcatagcatgaactcttcagatgcaatgcttttcttctgcttct |
16021795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 16022319 - 16022370
Alignment:
| Q |
266 |
agtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacata |
317 |
Q |
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| T |
16022319 |
agtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacata |
16022370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 14391931 - 14391823
Alignment:
| Q |
59 |
aatataaacaatctcgaatacttatccat-tcagaatgtacactctcatgtgaaggaaaacaatttgtggcaaccttgctactctgattgaacgaatgtt |
157 |
Q |
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|||||||||| |||| |||||||| ||| |||||||||||||| ||||||| |||||||||||||| || |||||||||||||| |||||||||||| |
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| T |
14391931 |
aatataaacactctcaaatacttacccaactcagaatgtacactttcatgtgcaggaaaacaatttgcgg-aaccttgctactctagctgaacgaatgtt |
14391833 |
T |
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| Q |
158 |
tgaagacttt |
167 |
Q |
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| T |
14391832 |
ttaagacttt |
14391823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 14389827 - 14389775
Alignment:
| Q |
265 |
aagtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacata |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
14389827 |
aagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacata |
14389775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 14398050 - 14398000
Alignment:
| Q |
129 |
aaccttgctactctgattgaacgaatgtttgaagacttttcttgttaatgg |
179 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||| |||| |
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| T |
14398050 |
aaccttgctactctgattgaacaaatgtttgaaaacttttcttgttcatgg |
14398000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 394
Target Start/End: Original strand, 16022487 - 16022548
Alignment:
| Q |
333 |
tgataaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaag |
394 |
Q |
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| T |
16022487 |
tgataaactatatcgacaaactttccaggttttcttgatttctcatatgcatatagttgaag |
16022548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 14389637 - 14389574
Alignment:
| Q |
333 |
tgataaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaagaa |
396 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||| | |||||| ||||||||||| |
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| T |
14389637 |
tgataaactatatcaacaaactttccaagctttcttgatttgtcaaatgcatatagttgaagaa |
14389574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 14395757 - 14395714
Alignment:
| Q |
129 |
aaccttgctactctgattgaacgaatgtttgaagacttttcttg |
172 |
Q |
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| T |
14395757 |
aaccttggtactcttattgaacgaatgtttgaaaacttttcttg |
14395714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 13856781 - 13856819
Alignment:
| Q |
317 |
aaattcgattcattcctgataaactatatcaacaagctt |
355 |
Q |
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|||||| ||||||||||||||||||||||||| |||||| |
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| T |
13856781 |
aaattccattcattcctgataaactatatcaaaaagctt |
13856819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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