View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_low_17 (Length: 318)
Name: NF0793_low_17
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 4046865 - 4046786
Alignment:
| Q |
165 |
tattattcgtatcgcggttgttcctgattccaatggtgagaaaattcttgataaattcagctcttgttaccctatctctg |
244 |
Q |
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| T |
4046865 |
tattattcgtatcgcggttgttcctgattccaatggtgagaaaattcttgataaatttagctcttgttaccctatctctg |
4046786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 3753409 - 3753452
Alignment:
| Q |
201 |
tgagaaaattcttgataaattcagctcttgttaccctatctctg |
244 |
Q |
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| T |
3753409 |
tgagaaaattcttgataaattcagctcttgttaccctgtctctg |
3753452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 5176388 - 5176328
Alignment:
| Q |
97 |
ttgttttccttctctttttgcaagtttgcatgag-ttttattttccctttgctttggtatc |
156 |
Q |
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| T |
5176388 |
ttgttttccttctctttttgcaagtttgtatgagttttttttttccctttgctttggtatc |
5176328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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