View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_low_20 (Length: 306)
Name: NF0793_low_20
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 8465653 - 8465525
Alignment:
| Q |
2 |
gtgattaacaataaacaaacatcataattcataatggtagtaggtgttggatttttgtgctatatttgatacaataagtggctcatttcgatgcttctct |
101 |
Q |
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| T |
8465653 |
gtgattaacaataaacaaacatcataattcataatggtagtaggtgttggatttttgtgctatatttgatacaataagtggctcatttcgatgcttctct |
8465554 |
T |
|
| Q |
102 |
cttcatcattcattcactcactctctgtg |
130 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
8465553 |
gttcatcattcattcactcactctctgtg |
8465525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 8465695 - 8465666
Alignment:
| Q |
1 |
ggtgattaacaataaacaaacatcataatt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
8465695 |
ggtgattaacaataaacaaacatcataatt |
8465666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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