View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0793_low_23 (Length: 285)
Name: NF0793_low_23
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 34923735 - 34923986
Alignment:
| Q |
16 |
tatgatcaagctcaagaagatacacatgaggaataccccagatacccgccggaacctcaccggaaaaccgattataacccaatctcacacgtgtcaaact |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
34923735 |
tatgagcaagctcaagaagatacacatgaggaagaccccagatacccgccggaacctcaccggaaaaccgattaaaacccaatctcacacgcgtcaaact |
34923834 |
T |
|
| Q |
116 |
ctgacaagtccccaaactcgccggaatctcaccggtaaacagattatatatcatcaaaacctcctccaactcaccaaaatcacacaaactcgccggaata |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34923835 |
ctgacaagtccccaaactcgccggtatctcaccggtgaacagattatatatcatcaaaacctcctccaactcaccaaaatcacacaaactcgccggaata |
34923934 |
T |
|
| Q |
216 |
ttcccccaaaactgattactcgaaacatcaagccacctcaacggcgacctct |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34923935 |
ttcccccaaaactgattactcgaaacatcaagccacctcaacggcgacctct |
34923986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6397 times since January 2019
Visitors: 5768