View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_low_26 (Length: 282)
Name: NF0793_low_26
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 32 - 265
Target Start/End: Complemental strand, 10173967 - 10173734
Alignment:
| Q |
32 |
ttctttaattgttcatcaatgtcatctgttcttacgtttgttaatttatactacttgttcttccttttaatctcatgatttgacatggcttctttggttt |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
10173967 |
ttctttaattgttcatcaatgtcatctgttcttacgtttgttaatttatactacttgttcttccctttaatctcatgatttgacatggcttctttagttt |
10173868 |
T |
|
| Q |
132 |
attttgagttgcatgccttatctggagtatggaagtagaatagtgtttcatctactctaaaccaacggtccttttcgctcacaatttacaggtgtgaatt |
231 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10173867 |
attttgagttgcatgccttacctggagtacggaagtagaattgtgtttcatctactctaaaccaacggtccttttcgctcacaatttacaagtgtgaatt |
10173768 |
T |
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| Q |
232 |
tgaagcggattacattgggcttctactaatggca |
265 |
Q |
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| T |
10173767 |
tgaagcggattacattgggcttctactaatggca |
10173734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 2928078 - 2928017
Alignment:
| Q |
210 |
tcacaatttacaggtgtgaatttgaagcggattacattgggcttctactaatggcaacagct |
271 |
Q |
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| T |
2928078 |
tcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagct |
2928017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 2311192 - 2311253
Alignment:
| Q |
210 |
tcacaatttacaggtgtgaatttgaagcggattacattgggcttctactaatggcaacagct |
271 |
Q |
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| T |
2311192 |
tcacaatttgcatgtttgaatttgaagctgattacatcgggcttcaactaatggcagcagct |
2311253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 32 - 265
Target Start/End: Complemental strand, 1238205 - 1237949
Alignment:
| Q |
32 |
ttctttaattgttcatcaatgtcatctgttcttacgt----ttgttaatttatactacttgttcttccttttaatctcatgatttgacatggcttctttg |
127 |
Q |
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||||||||||||| || |||||||| ||||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1238205 |
ttctttaattgtttattaatgtcatgtgttcttacgtacgtttgtta-tttgtactacttgttcttccttttagcatcatgatttgacatggcttctttg |
1238107 |
T |
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| Q |
128 |
gtttattttgagttgcatgccttatctggagtatggaagtagaata--gtgtttcatctactctaaaccaacggtccttttcgc---------------- |
209 |
Q |
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| T |
1238106 |
gtttattttgagttgca--ccttacaaggagtatggaagtagaataatgtgtttcatcttctctaaaccaacggtcctttttgcttgttctcaatccaat |
1238009 |
T |
|
| Q |
210 |
----tcacaatttacaggtgtgaatttgaagcggattacattgggcttctactaatggca |
265 |
Q |
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| T |
1238008 |
ttattcacaatttgcaggtttgaatttgaagcggattacattgggcttctactaatggca |
1237949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 794648 - 794575
Alignment:
| Q |
65 |
acgtttgttaatttatactacttgttcttccttttaatctcatgatttgacatggcttctttggtttattttga |
138 |
Q |
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| T |
794648 |
acgtttgttactttgtactacttgttatttcttttagcctcatgatttgacatgacttctttggtttattttga |
794575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 1175437 - 1175498
Alignment:
| Q |
210 |
tcacaatttacaggtgtgaatttgaagcggattacattgggcttctactaatggcaacagct |
271 |
Q |
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||||||||| ||||| ||||| |||||| |||||||||||||||||||| |||||| ||||| |
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| T |
1175437 |
tcacaatttgcaggtttgaatatgaagctgattacattgggcttctactgatggcagcagct |
1175498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 29088936 - 29088875
Alignment:
| Q |
210 |
tcacaatttacaggtgtgaatttgaagcggattacattgggcttctactaatggcaacagct |
271 |
Q |
| |
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||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
29088936 |
tcacaatttgcagttttgaatttgaagttgattacattgggcttctactaatggcatcagct |
29088875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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