View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0793_low_27 (Length: 263)
Name: NF0793_low_27
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 42206537 - 42206767
Alignment:
| Q |
13 |
gaacaaataatattgattttgagctttatcaaaagtaacaatatatgcttttnnnnnnnnntggggaagatgctgcggaatttggtcaaaacataacaac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42206537 |
gaacaaataatattgattttgagctttatcaaaagtaacaatatatgctttaaaaaaaaaatggggaagatgctgcggaatttggtcacaacataacaac |
42206636 |
T |
|
| Q |
113 |
ttgtaaacttagtttggcttctaaatttacaaaccattaaattaagtttagtcagagacaaataaatgagatcgcttatgtattggtagggtagccacgt |
212 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42206637 |
ttgtaaacgtagtttggcttctaaatttacaaaccattaaattaagtttagtcagagacaaacaaatgagatcgcttatgtattggtagggtagccacat |
42206736 |
T |
|
| Q |
213 |
taccaactagtcacattttttatgatgatgt |
243 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |
|
|
| T |
42206737 |
taccaactagtcacatttcttattatgatgt |
42206767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 42215405 - 42215635
Alignment:
| Q |
13 |
gaacaaataatattgattttgagctttatcaaaagtaacaatatatgcttttnnnnnnnnntggggaagatgctgcggaatttggtcaaaacataacaac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42215405 |
gaacaaataatattgattttgagctttatcaaaagtaacaatatatgctttaaaaaaaaaatggggaagatgctgcggaatttggtcacaacataacaac |
42215504 |
T |
|
| Q |
113 |
ttgtaaacttagtttggcttctaaatttacaaaccattaaattaagtttagtcagagacaaataaatgagatcgcttatgtattggtagggtagccacgt |
212 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42215505 |
ttgtaaacgtagtttggcttctaaatttacaaaccattaaattaagtttagtcagagacaaacaaatgagatcgcttatgtattggtagggtagccacat |
42215604 |
T |
|
| Q |
213 |
taccaactagtcacattttttatgatgatgt |
243 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |
|
|
| T |
42215605 |
taccaactagtcacatttcttattatgatgt |
42215635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7104 times since January 2019
Visitors: 5774