View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_low_5 (Length: 468)
Name: NF0793_low_5
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 96 - 465
Target Start/End: Original strand, 56442216 - 56442585
Alignment:
| Q |
96 |
gagacatggcagtgagatccttgatagcagaaacaatgaagtcaaaaacatgatgtttgaaagaagtgttacgaagtaagatccttggaccggtgacagg |
195 |
Q |
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| T |
56442216 |
gagacatggcagtgagatccttgatagcagaaacaatgaagtcaaaaatatgatgtttgaaagaagtgttacgaagtaagatccttggaccggtgacagg |
56442315 |
T |
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| Q |
196 |
ggtgaaggggacacaggattgtaacttaggataataagaattggaaccataaaaatgagagtaagcattggcccaagaatgatcaaaaacgaattcacca |
295 |
Q |
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| T |
56442316 |
ggtgaaggggacacaggattgtaacttaggataataagaattggaaccataaaaatgagagtaagcattggcccaagaatgatcaaaaacgaattcacca |
56442415 |
T |
|
| Q |
296 |
taagaatgggtcttgagatagagaggaacaacagcgagaatatgattatgaatatccttagcgatgatgtggtgtggggtccatcccttttccttaacag |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56442416 |
taagaatgggtcttgagatagagaggaacaacagcgagaatatgattatgaatatccttagcgatgatgtggtgtggggtccatcccttttccttaacag |
56442515 |
T |
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| Q |
396 |
aagaagatgatagttctagagaggatagaaatgcgtgtgagagaaatggattgaatttctctgctcctcc |
465 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| |||||| |
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| T |
56442516 |
aagaagatgatagttctagagaggatagaaaagcgtgtgagagaaatggattgaacttgtctggtcctcc |
56442585 |
T |
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