View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_low_6 (Length: 460)
Name: NF0793_low_6
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 123 - 451
Target Start/End: Complemental strand, 34923986 - 34923658
Alignment:
| Q |
123 |
agaggtcgccgttgaggtggcttgatgtttcgagtaatcagttttgggggaatattccggcgagtttgtgtgattttggtgagttggaggaggttttgat |
222 |
Q |
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| T |
34923986 |
agaggtcgccgttgaggtggcttgatgtttcgagtaatcagttttgggggaatattccggcgagtttgtgtgattttggtgagttggaggaggttttgat |
34923887 |
T |
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| Q |
223 |
gatatataatctgtttaccggtgagattccggcgagtttggggacttgtcagagtttgacacgtgtgagattgggttataatcggttttccggtgaggtt |
322 |
Q |
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| T |
34923886 |
gatatataatctgttcaccggtgagataccggcgagtttggggacttgtcagagtttgacgcgtgtgagattgggttttaatcggttttccggtgaggtt |
34923787 |
T |
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| Q |
323 |
ccggcgggtatctgtgctcctcctcatgtgtatcttcttgagcttgctcataactcgttttcgggttctatttcgaagactattgctggagcagggaacc |
422 |
Q |
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| T |
34923786 |
ccggcgggtatctggggtcttcctcatgtgtatcttcttgagcttgctcataactcgttttcgggttctatttcgaagactattgctggagcagggaacc |
34923687 |
T |
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| Q |
423 |
tttcgttgttgatattgtccaagaataat |
451 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34923686 |
tttcgttgttgatattgtccaagaataat |
34923658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 420
Target Start/End: Original strand, 4195441 - 4195717
Alignment:
| Q |
144 |
ttgatgtttcgagtaatcagttttgggggaatattccggcgagtttgtgtgattttggtgagttggaggaggttttgatgatatataatctgtttaccgg |
243 |
Q |
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|||||||||||| |||| |||||| || | ||||||| |||||||||||| ||| | ||||||||| ||||||||||| ||||| || | || |
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| T |
4195441 |
ttgatgtttcgaataataagttttccggtaggattccggtgagtttgtgtgaacgtggcgcgttggaggaacttttgatgatacataatgaattctctgg |
4195540 |
T |
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| Q |
244 |
tgagattccggcgagtttggggacttgtcagagtttgacacgtgtgagattgggttataatcggttttccggtgaggttccggcgggtatctgtgctcct |
343 |
Q |
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|||||||| | |||||| ||| |||| || ||||| || || || ||||||| |||| ||| || ||||| |||||||||||| | || | || |
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| T |
4195541 |
cgagattccagggagtttaggggagtgtcggacattgacgcgcgttaggttgggttttaataagttgtcaggtgaagttccggcgggtttttggggtctg |
4195640 |
T |
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| Q |
344 |
cctcatgtgtatcttcttgagcttgctcataactcgttttcgggttctatttcgaagactattgctggagcagggaa |
420 |
Q |
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|| ||||| |||||||||||||||| | |||||| |||||| ||||| ||| |||||||||| |||||| ||||| |
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| T |
4195641 |
ccgcatgtttatcttcttgagcttgttgataacttgttttctggttcaattggtaagactattggtggagctgggaa |
4195717 |
T |
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