View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_low_7 (Length: 446)
Name: NF0793_low_7
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 98 - 440
Target Start/End: Original strand, 35243580 - 35243925
Alignment:
| Q |
98 |
aaaatatccaacaatcttgtcaacacccaaagaagaatgatatacgagtaggataaactgtgaccttaacgtatttaacttgattatggtcaattaaact |
197 |
Q |
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| T |
35243580 |
aaaatatccaacaatcttgtcaaaacccaaagaagaatgatatacgagtaggataaactgtgaccttgatgtatttgacttgattatggtcaattaaact |
35243679 |
T |
|
| Q |
198 |
aactatcctttccctacctattgaacaggttttattgtctatacttgtgtagttgtggttctagtttttgtcctcattttctactgtgttccaagatatg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35243680 |
aactatcctttccctacctattgaacaggttttattgtctatacttgtgtagttgtggttctagtttttgtcctcattttctactgtgttccaagatatg |
35243779 |
T |
|
| Q |
298 |
gcgagagacatcttgtcgtatatgttggaatatgttctctgactggctcacttacggtattgattatattctaaatacgcgcgtgttgttcataattatg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35243780 |
gcgagagacatcttgtcgtatatgttggaatatgttctctcactggctcacttacggtattgattatattctaaatacgcacgtgttgttcataattatg |
35243879 |
T |
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| Q |
398 |
tatgtattgt---ataatctcaatggtgattattgttacacaggtt |
440 |
Q |
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|||||||| | ||||||||||||||||||||||||||| ||||| |
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| T |
35243880 |
tatgtattatataataatctcaatggtgattattgttacataggtt |
35243925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 37890984 - 37890942
Alignment:
| Q |
318 |
tatgttggaatatgttctctgactggctcacttacggtattga |
360 |
Q |
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| T |
37890984 |
tatgttggaatatgttctctcacgggctcaattacggtattga |
37890942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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