View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0793_low_8 (Length: 432)
Name: NF0793_low_8
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_8 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 34 - 432
Target Start/End: Complemental strand, 7662573 - 7662182
Alignment:
| Q |
34 |
ccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaagaaccatttccttgaactcatcagctttagggtcaaaa |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
7662573 |
ccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaagaaccatttccttgaactcatcagccttagggtcacaa |
7662474 |
T |
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| Q |
134 |
ccaccattgccatcattaaatactcttcttcctaacataaccctagcaagtgcatttgtggtacatacattcaatagttgtcccaagttcacagcttttg |
233 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7662473 |
ccaccattgccatcattgaatactcttcttcctaacataaccctagcaagtgcatttgtggtacatacattcaatagttgtcccaaattcacagcttttg |
7662374 |
T |
|
| Q |
234 |
tgtttgaataattacttgccaaattacttgtcaatcttgctacctcttcctg-aaaagtataattgattaggttcaatcgactcctaaattcgtaagagt |
332 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||| |||| |||| |
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| T |
7662373 |
tgtttgaataattacttgctaaattacttgtcaatcttgctacctcttcctgcaaaagtgtaattgattaggtacaattgactcctaaatacgtaggagt |
7662274 |
T |
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| Q |
333 |
ttaaatcgtatttaatctaactgagatgaataaaaaaccgagatgaaattaaagaaatgatcaacaaactatatcacaatttttcacttatatgcaatga |
432 |
Q |
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| T |
7662273 |
ttaaatcgtatttaaaataaccgagatgaataaaaaaacgagatgaaattaaagaaa--------aaactatatcaaaatttttcacttataagcaatga |
7662182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 34 - 424
Target Start/End: Original strand, 7621617 - 7621998
Alignment:
| Q |
34 |
ccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaagaaccatttccttgaactcatcagctttagggtcaaaa |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7621617 |
ccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaagaaccatttccttgaactcatcagctttagggtcacaa |
7621716 |
T |
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| Q |
134 |
ccaccattgccatcattaaatactcttcttcctaacataaccctagcaagtgcatttgtggtacatacattcaatagttgtcccaagttcacagcttttg |
233 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7621717 |
ccaccattgccatcattgaatactcttcttcctaacataaccctagcaagtgcattggtggtacatacattcaatagttgtcccaagttcacagcttttg |
7621816 |
T |
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| Q |
234 |
tgtttgaataattacttgccaaattacttgtcaatcttgctacctcttcctgaaaagtataattgattaggttcaatcgactcctaaattcgtaagagtt |
333 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
7621817 |
tgtctgaataattacttgccaaattgcttgtcaatcttgctacctcttcctgaaaagtgtaattgattaggtacaattgactcctaaattcgtaggagtt |
7621916 |
T |
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| Q |
334 |
taaatcgtatttaatctaactgagatgaataaaaaaccgagatgaaattaaagaaatgatcaacaaactatatcacaatttttcacttata |
424 |
Q |
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|||||||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
7621917 |
taaatcgtatttaaaataaccgagatgaataaaaaa-agagatgaaattaaagaaa--------aaactatatcaaaatttttcacttata |
7621998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 7667688 - 7667522
Alignment:
| Q |
34 |
ccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaagaaccatttccttgaactcatcagctttagggtcaaaa |
133 |
Q |
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|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7667688 |
ccattctaatgaaggaataaaatcacttatattaaaaactccagctaacaccatcaattcaagaaccatttccttgaactcatcagctttagggtcacaa |
7667589 |
T |
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| Q |
134 |
ccaccattgccatcattaaatactcttcttcctaacataaccctagcaagtgcatttgtggtacata |
200 |
Q |
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| T |
7667588 |
ccaccattgccatcattgaatactcttcttcctaacataatcctagcaagtgcattggtggtacata |
7667522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 34 - 306
Target Start/End: Complemental strand, 7682079 - 7681808
Alignment:
| Q |
34 |
ccattccaatgatggaataaaatcacttatattgaaaactccagctaacaccatcaattcaagaaccatttccttgaactcatcagctttagggtcaaaa |
133 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||||||| |||| |||||||| ||| |||||| |||| || ||| |||||||||| |||||| |
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| T |
7682079 |
ccattccaatgatggaataaaatcaccaatgttgaaaactccacctaaaaccatcaactcatcaaccatagccttaaaatcaccagctttaggatcaaaa |
7681980 |
T |
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| Q |
134 |
ccaccattgccatcattaaatactcttcttcctaacataaccctagcaagtgcatttgtggtacatacattcaatagttgtcccaagttcacagcttttg |
233 |
Q |
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||||||| || ||||||||||| || ||||||| || | |||| ||||||||||| || ||||||||||| ||||||||||| ||||||||| |||||| |
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| T |
7681979 |
tcaccatttccttcattaaataccctccttcctatcacagccctggcaagtgcattggttgtacatacatttaatagttgtcctaagttcacaacttttg |
7681880 |
T |
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| Q |
234 |
tgtttgaataattacttgccaaattacttgtcaatcttgctacctcttcctgaaaagtataattgattaggtt |
306 |
Q |
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|||||||| ||||||||||||||| | |||||||| |||||||||||||||| | ||||||||||||| |
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| T |
7681879 |
agtttgaatgattacttgccaaattgttgaccaatcttgttacctcttcctgaaaa-tgcaattgattaggtt |
7681808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 197 - 368
Target Start/End: Complemental strand, 7665545 - 7665378
Alignment:
| Q |
197 |
catacattcaatagttgtcccaagttcacagcttttgtgtttgaataattacttgccaaattacttgtcaatcttgctacctcttcctgaaaagtataat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||||||||||||||||| | ||| |
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| T |
7665545 |
catacattcaatagttgtcccaagttcacagcttttgtgtctgaa----cacttgccaaatttcttgtcaatcttactacctcttcctgaaaaatgcaat |
7665450 |
T |
|
| Q |
297 |
tgattaggttcaatcgactcctaaattcgtaagagtttaaatcgtatttaatctaactgagatgaataaaaa |
368 |
Q |
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||||||||| ||||| | || || ||||||| || |||||||||||||||| ||| ||||||||||||| |
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| T |
7665449 |
tgattaggtccaatcaaatcatagattcgtatgaatttaaatcgtatttaaaataatccagatgaataaaaa |
7665378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 218 - 315
Target Start/End: Complemental strand, 7661593 - 7661496
Alignment:
| Q |
218 |
aagttcacagcttttgtgtttgaataattacttgccaaattacttgtcaatcttgctacctcttcctgaaaagtataattgattaggttcaatcgact |
315 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| |||||| |
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| T |
7661593 |
aagttcacaacttttgtgtctgaataattacttgccaaattacttgtcaatcttgctaactcttcctgaaaagtacaattgattagattcagtcgact |
7661496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 45479999 - 45479902
Alignment:
| Q |
134 |
ccaccattgccatcattaaatactcttcttcctaacataaccctagcaagtgcatttgtggtacatacattcaatagttgtcccaagttcacagcttt |
231 |
Q |
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|||||||| || ||||||||||||| | ||||| ||| |||||||| | ||| ||||| || ||||||||||| | |||||| ||||| || ||||| |
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| T |
45479999 |
ccaccattcccctcattaaatactcgccgtcctatcattaccctagccaatgcgtttgtcgtgcatacattcaacatttgtcctaagtttactgcttt |
45479902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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