View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0793_low_9 (Length: 425)
Name: NF0793_low_9
Description: NF0793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0793_low_9 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 102 - 425
Target Start/End: Original strand, 1424468 - 1424797
Alignment:
| Q |
102 |
ccgctgctccttggttatttgttctctttggtaagacatcagtcaatatgtcaaaaagaggattgatacaatccctcagacaagttgaaa------taaa |
195 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
1424468 |
ccgctgcactttggttatttgttctctttggtaagacatcagtcaatatgtcaaaaagaggattgatacaatccttcagacaagttgaaatagaaataaa |
1424567 |
T |
|
| Q |
196 |
aaatgtaagatcttttccgaaggaattggataaaccaacatatacgtctctgacatactcaggtacatctctttatccacttccactttgtaagtcttaa |
295 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1424568 |
aaatgtaagatcttttctgaaggaattggataaaccaacatgtacgtctctgacatgctcaggtacatctctttctccacttccactttgtaagtcttaa |
1424667 |
T |
|
| Q |
296 |
ttttatgttagatttaatgcttcagataaaccatataaccaatactgaattctggagccactaaccacatgacacccttacctacacacttctccactta |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||| |
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| T |
1424668 |
ttttatgttagatttaatgcttcagataaaccatataaccaatactggattctggagccactgaccacatgacacccttacttacatacttctccactta |
1424767 |
T |
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| Q |
396 |
ttcaccttgtcctagcaacaagaaattatc |
425 |
Q |
| |
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||||||||||| ||||||||||||| |||| |
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| T |
1424768 |
ttcaccttgtcttagcaacaagaaaatatc |
1424797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 10712438 - 10712571
Alignment:
| Q |
136 |
gacatcagtcaatatgtcaaaaagaggattgatacaatccctcaga-caagttgaaataaaaaatgtaagatcttttccgaaggaattggataaaccaac |
234 |
Q |
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||||||| |||||||||||||| ||||||| | ||| |||| || |||| ||||||||| || || |||||||||| ||||||||| ||||||||| |
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| T |
10712438 |
gacatcaatcaatatgtcaaaagaaggattggttcaa-ccctttgatcaagatgaaataaacaaggtgagatcttttcttaaggaattgaataaaccaaa |
10712536 |
T |
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| Q |
235 |
atatacgtctctgacatactcaggtacatctcttt |
269 |
Q |
| |
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|| ||||||| || ||| ||||||||||||||||| |
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| T |
10712537 |
atgtacgtctatggcatgctcaggtacatctcttt |
10712571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 136 - 425
Target Start/End: Original strand, 50057687 - 50057983
Alignment:
| Q |
136 |
gacatcagtcaatatgtcaaaaagaggattgatacaatccctcagacaagttgaaataaaaaatgtaagatcttttccgaaggaattggataaaccaaca |
235 |
Q |
| |
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||||||| |||||||||||||| ||||||||| ||| || |||| ||| ||||||||| || ||||||||||||| |||||||| |||||||||| | |
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| T |
50057687 |
gacatcaatcaatatgtcaaaagaaggattgattcaacccttcagtgaagatgaaataaacaaggtaagatcttttcttaaggaattagataaaccaaga |
50057786 |
T |
|
| Q |
236 |
tatacgtctctgacatactcaggtacatctctttatccacttccactttgtaagtcttaattttatgttagatttaatgcttcagataaaccatataacc |
335 |
Q |
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| |||||||||| ||||| ||||||||||||||| ||||| ||||||| |||||||| |||||| |||| ||||||||||||| |||||||||| ||||| |
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| T |
50057787 |
tgtacgtctctggcatacacaggtacatctctttctccacatccacttggtaagtctcaattttctgttggatttaatgcttcggataaaccatctaacc |
50057886 |
T |
|
| Q |
336 |
a-------atactgaattctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatc |
425 |
Q |
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| ||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
50057887 |
aatattggatactagattctggagccactaaccacatgacacccctacacacacacttttccacttattcaccttgtcctagcaacaagaaaatatc |
50057983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 109 - 425
Target Start/End: Complemental strand, 28095772 - 28095451
Alignment:
| Q |
109 |
tccttggttatttgttctctttggtaagacatcagtcaatatgtcaaaaagaggattgatacaatccctcagacaagttgaaataaaaaatgtaagatct |
208 |
Q |
| |
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||||||| |||||||||| || |||||||||||||||||||||||||| ||| | | || ||| | ||| |||| |||||||||||| || |||||| |
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| T |
28095772 |
tccttggctatttgttctttt--gtaagacatcagtcaatatgtcaaaaggagaaatcattcaactcttcactcaagatgaaataaaaaaggtgagatct |
28095675 |
T |
|
| Q |
209 |
tttccgaaggaattggataaaccaacatatacgtctctgacatactcaggtacatctctttatccacttccactttgtaagtcttaattttatgttagat |
308 |
Q |
| |
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|||| ||| |||||||||||||||||| || ||||| |||||| || |||||||||||| || ||||||| || |||||||| | |||| | || || |
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| T |
28095674 |
tttctcaagcaattggataaaccaacatgtaaatctctaacatacacatgtacatctctttctctacttccatttggtaagtctcatttttctcttgaat |
28095575 |
T |
|
| Q |
309 |
ttaatgcttcagataaaccatataaccaatactg-------aattctggagccactaaccacatgacacccttacctacacacttctccacttattcacc |
401 |
Q |
| |
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|||||||||| |||||||||| ||||||||| || ||||||||||||| | ||||||||||||||||| |||||||| | |||||||||||| |
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| T |
28095574 |
ttaatgcttcggataaaccatctaaccaatattggatattagattctggagccaccgagcacatgacacccttacccacacacttttacacttattcacc |
28095475 |
T |
|
| Q |
402 |
ttgtcctagcaacaagaaattatc |
425 |
Q |
| |
|
|| |||||||||||||||| |||| |
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| T |
28095474 |
ttatcctagcaacaagaaaatatc |
28095451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 363 - 425
Target Start/End: Complemental strand, 46146870 - 46146808
Alignment:
| Q |
363 |
catgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatc |
425 |
Q |
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||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||| |||| |
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| T |
46146870 |
catgacacccttacccacagaagtctccacttatacaccttgtcctagcaacaagaaaatatc |
46146808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 112 - 324
Target Start/End: Complemental strand, 1673990 - 1673774
Alignment:
| Q |
112 |
ttggttatttgttctctttggtaagacatcagtcaatatgtcaaaaagaggattgatacaatccctcagacaagttgaaataaaaaa----tgtaagatc |
207 |
Q |
| |
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|||||||||||||||||||||||||||| || || |||||||| || || ||||||| ||| || |||| |||| |||||||||||| ||||||||| |
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| T |
1673990 |
ttggttatttgttctctttggtaagacaccaatcgatatgtcacaaggatgattgattcaacccttcagtcaagatgaaataaaaaaggtatgtaagatc |
1673891 |
T |
|
| Q |
208 |
ttttccgaaggaattggataaaccaacatatacgtctctgacatactcaggtacatctctttatccacttccactttgtaagtcttaattttatgttaga |
307 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| || |||||||| |||||||||||| ||||||||||||| |||||||| |||||| |||| || |
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|
| T |
1673890 |
ttttcttaaggaattggataaaccaacatgtacgtctttggcatactcaagtacatctctttctccacttccacttggtaagtctcaattttctgttgga |
1673791 |
T |
|
| Q |
308 |
tttaatgcttcagataa |
324 |
Q |
| |
|
||||||||||| ||||| |
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| T |
1673790 |
tttaatgcttcggataa |
1673774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 117 - 425
Target Start/End: Complemental strand, 29443264 - 29442961
Alignment:
| Q |
117 |
tatttgttctctttggtaagacatcagtcaatatgtcaaaaagaggattgatacaatccctcagacaagttgaaataaaaaatgtaagatcttttccgaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| || | | || |||| ||||||||||||||| |||| ||||| || |
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|
| T |
29443264 |
tatttgttctctttggtaagacatcagtcaatatgtcaaaaggaggattgacccatccgtttagtcaagatgaaataaaaaatgtgagatattttcttaa |
29443165 |
T |
|
| Q |
217 |
ggaattggat-aaaccaacatatacgtctctgacatactcaggtacatctctttatccacttccactttgtaagtcttaattttatgttagatttaatgc |
315 |
Q |
| |
|
| |||||||| ||| |||||| || |||| |||| |||||||||||||| |||||| || | || ||| |||||| |||| |||||||||| |
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|
| T |
29443164 |
gaaattggataaaaacaacatgtaagtct------tacttaggtacatctctttctccact-----ttggaaactctcaattttctgttggatttaatgc |
29443076 |
T |
|
| Q |
316 |
ttcagataaaccatataacca-------atactgaattctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcct |
408 |
Q |
| |
|
|| | ||||||||| |||| | ||||| ||| | |||||||| ||||||||||||||||| | |||||| |||||||||||| ||||||||| |
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|
| T |
29443075 |
tttatataaaccatctaactaatattgcatactagattttagagccactcaccacatgacacccttatccacacac--ctccacttattctccttgtcct |
29442978 |
T |
|
| Q |
409 |
agcaacaagaaattatc |
425 |
Q |
| |
|
|| ||||||| |||||| |
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|
| T |
29442977 |
agaaacaagagattatc |
29442961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 405
Target Start/End: Original strand, 3006880 - 3006941
Alignment:
| Q |
344 |
attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgt |
405 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| |||||||| || || |||||||||||| |
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|
| T |
3006880 |
attctggagccactgaccacatgacacctttacccacacacttttctacctattcaccttgt |
3006941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 344 - 421
Target Start/End: Original strand, 41894250 - 41894327
Alignment:
| Q |
344 |
attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaat |
421 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| || || ||||||||||||||||||||||| |||| |
|
|
| T |
41894250 |
attctggagccactcaccacatgacacctttacctacacacttttctacctattcaccttgtcctagcaacaaaaaat |
41894327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 344 - 420
Target Start/End: Complemental strand, 25475810 - 25475734
Alignment:
| Q |
344 |
attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaa |
420 |
Q |
| |
|
|||||||||||||| ||||||||||||| | | | ||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
25475810 |
attctggagccactgaccacatgacaccgtaagccacacacttctccacttattcaccttatcctagcaacaagaaa |
25475734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 425
Target Start/End: Original strand, 2411885 - 2411966
Alignment:
| Q |
344 |
attctggagccactaaccacatgacacccttacctacacacttctccacttattcaccttgtcctagcaacaagaaattatc |
425 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||||||||||| || || ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
2411885 |
attctagagccactcaccacatgacacctttacctacacacttttctacctattcaccttgtcctagtaacaaaaaaatatc |
2411966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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